Ligand clusters for UniProt code P38501

Ligand clusters for P38501: Copper-containing nitrite reductase from Alcaligenes faecalis

		Top 6 (of 22) ligand clusters Cluster 1. 10 ligand types 43 ligands Cluster 2. 8 ligand types 45 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 2 ligand types 11 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 2 ligand types 10 ligands
Representative protein: 1et7A

Structures

PDB		Schematic diagram
1et7A
3h4fA
2pp9A
2pp7A
2ppcA
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
Cu1		1. Metal: CU1 × 1 PDB code: 2b08(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5d4h(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 2fjs(A).
		4. Ligand: ACM × 1 Acetamide PDB code: 1zds(A).
_Cu		5. Metal: _CU × 30 PDB codes: 1j9q(A), 1j9r(A), 1j9s(A), 1j9t(A), 1l9o(A), 1l9p(A), 1l9q(A), 1l9r(A), 1l9s(A), 1l9t(A), 1npj(A), 1npn(A), 1sjm(A), 1zdq(A), 1zds(A), 2afn(A), 2e86(A), 2fjs(A), 2p80(A), 2pp7(A), 2pp8(A), 2pp9(A), 2ppa(A), 2ppc(A), 2ppe(A), 3h4f(A), 3h4h(A), 4ysc(A), 5d4i(A), 5f7b(A).
		6. Ligand: ACT × 5 Acetate ion PDB codes: 2e86(A), 2pp7(A), 2ppa(A),
		7. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 4yse(A).
		8. Ligand: NO2-ACT × 1 NO2=Nitrite ion, ACT=Acetate ion. PDB code: 2ppc(A).
		9. Ligand: NO3 × 1 Nitrate ion PDB code: 2pp9(A).
_Cl		10. Metal: _CL × 1 PDB code: 4ysc(A).

Cluster 2 contains 8 ligand types

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Ligand		Description
Cu1		1. Metal: CU1 × 1 PDB code: 2b08(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5d4h(A), 5d4j(A).
		3. Ligand: ACM × 2 Acetamide PDB codes: 1zds(A), 2b08(A).
_Cu		4. Metal: _CU × 35 PDB codes: 1et5(A), 1et7(A), 1et8(A), 1j9q(A), 1j9r(A), 1j9s(A), 1j9t(A), 1l9o(A), 1l9p(A), 1l9q(A), 1l9r(A), 1l9s(A), 1l9t(A), 1npj(A), 1npn(A), 1ntd(A), 1sjm(A), 1zdq(A), 1zds(A), 2afn(A), 2e86(A), 2fjs(A), 2p80(A), 2pp7(A), 2pp8(A), 2pp9(A), 2ppa(A), 2ppc(A), 2ppe(A), 3h4f(A), 3h4h(A), 3h56(A), 4ysc(A), 5d4i(A), 5f7b(A).
		5. Ligand: ACT × 2 Acetate ion PDB codes: 2pp7(A),
		6. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 4yse(A).
		7. Ligand: NO3 × 1 Nitrate ion PDB code: 2pp9(A).
_Cl		8. Metal: _CL × 1 PDB code: 4ysc(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5d4h(A), 5d4j(A).
		2. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 4yse(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: TRS × 9 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 1sjm(A), 2e86(A), 2fjs(A), 2pp7(A), 2pp8(A), 2pp9(A), 2ppa(A), 2ppc(A), 2ppe(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5d4h(A), 5d4j(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5d4h(A), 5d4j(A).
		2. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 5d4j(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: ACY × 2 acetic acid Acetic acid PDB codes: 4yse(A), 5d4h(A).
		2. Ligand: ACT × 8 Acetate ion PDB codes: 1sjm(A), 2fjs(A), 2e86(A), 2pp7(A), 2pp8(A), 2pp9(A), 2ppa(A), 2ppc(A).