Ligand clusters for UniProt code P29736

Ligand clusters for P29736: Myrosinase MA1 from Sinapis alba

		Top 6 (of 21) ligand clusters Cluster 1. 3 ligand types 18 ligands Cluster 2. 11 ligand types 55 ligands Cluster 3. 2 ligand types 28 ligands Cluster 4. 4 ligand types 33 ligands Cluster 5. 2 ligand types 18 ligands Cluster 6. 1 ligand type 18 ligands
Representative protein: 1dwaM

Structures

PDB		Schematic diagram
1dwaM
1dwfM
1dwgM
1dwhM
1dwiM
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-XYP-MAN-MAN-FUC × 15 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, XYP=Beta-D-Xylopyranose, FUC=Alpha-L-Fucopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e6q(M), 1e6s(M), 1e71(M), 1e73(M), 1myr(A), 1w9b(M), 1w9d(M), 2wxd(M).
		2. Ligand: NAG-NAG-BMA-XYP-MAN-FUC × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, XYP=Beta-D-Xylopyranose, FUC=Alpha-L-Fucopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 1e6x(M), 1e72(M).
		3. Ligand: NAG-NAG-MAN-XYP-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, XYP=Beta-D-Xylopyranose, FUC=Alpha-L-Fucopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 1e70(M).

Cluster 2 contains 11 ligand types

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Ligand		Description
		1. Ligand: SO4 × 19 Sulfate ion PDB codes: 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1myr(A), 1w9b(M), 1w9d(M).
		2. Ligand: GOL × 11 glycerin Glycerol PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e71(M), 1myr(A), 1w9b(M), 1w9d(M).
		3. Ligand: ASC × 3 ascorbic acid Ascorbic acid PDB codes: 1e71(M), 1e72(M), 1e73(M).
		4. Ligand: LGC × 1 gluconolactone D-Glucono-1,5-Lactone PDB code: 1e6x(M).
		5. Ligand: G2F × 2 2-Deoxy-2-Fluoro-Alpha-D-Glucopyranose PDB codes: 1e70(M), 1e73(M).
		6. Ligand: CGT × 1 Carba-Glucotropaeolin PDB code: 1w9b(M).
		7. Ligand: GOX × 2 (2s,3s,4r,5r)-6-(Hydroxyamino)-2-(Hydroxymethyl)-2,3,4, 5-Tetrahydropyridine-3,4,5-Triol PDB codes: 1e6s(M), 1e72(M).
		8. Ligand: NTZ × 1 Nojirimycine tetrazole PDB code: 1e6q(M).
		9. Ligand: SEH × 1 S-Benzyl phenylacetothiohydroximate-O-Sulfate PDB code: 1w9d(M).
		10. Ligand: SO4 × 13 Sulfate ion PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 2wxd(M).
		11. Ligand: E18 × 1 2-(Dimethylamino)ethyl (1z)-2-Phenyl-N-(Sulfooxy) ethanimidothioate PDB code: 2wxd(M).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-XYP-FUC × 18 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, XYP=Beta-D-Xylopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1myr(A), 1w9b(M), 1w9d(M), 2wxd(M).
		2. Ligand: NAG-NAG × 10 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1myr(A), 1w9b(M), 1w9d(M), 2wxd(M).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: SO4 × 9 Sulfate ion PDB codes: 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1myr(A).
		2. Ligand: NAG × 16 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1w9b(M), 1w9d(M).
		3. Ligand: SO4 × 7 Sulfate ion PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 2wxd(M).
		4. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 2wxd(M).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 17 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1myr(A), 1w9b(M), 1w9d(M).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 2wxd(M).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG × 18 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 1dwa(M), 1dwf(M), 1dwg(M), 1dwh(M), 1dwi(M), 1dwj(M), 1e4m(M), 1e6q(M), 1e6s(M), 1e6x(M), 1e70(M), 1e71(M), 1e72(M), 1e73(M), 1myr(A), 1w9b(M), 1w9d(M), 2wxd(M).