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EBI
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Ligand clusters for UniProt code P24297
Ligand clusters for P24297: Rubredoxin from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
4 ligand clusters
Cluster 1.
2 ligand types
3 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
3 ligand types
20 ligands
Cluster 4.
2 ligand types
2 ligands
Representative protein: 3kyuA
Structures
PDB
Schematic diagram
3kyu
A
3kyv
A
5nw3
A
1vcx
A
3kyx
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
5nw3
(A),
5ome
(A).
_Na
2. Metal:
_NA × 1
PDB code:
5ome
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
5ome
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
_Fe
1. Metal:
_FE × 18
PDB codes:
1caa
(A),
1cad
(A),
1iu5
(A),
1vcx
(A),
3kyu
(A),
3kyv
(A),
3kyw
(A),
3kyx
(A),
3kyy
(A),
3ryg
(A),
3rz6
(A),
3rzt
(A),
3ss2
(A),
4ar5
(A),
4ar6
(A),
4k9f
(A),
5nw3
(A),
5ome
(A).
_Zn
2. Metal:
_ZN × 1
PDB code:
2pvx
(A).
_Cd
3. Metal:
_CD × 1
PDB code:
5ai3
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
__K
1. Metal:
__K × 1
PDB code:
5nw3
(A).
_Na
2. Metal:
_NA × 1
PDB code:
5nw3
(A).