Ligand clusters for UniProt code P22629

Ligand clusters for P22629: Streptavidin from Streptomyces avidinii

		Top 6 (of 14) ligand clusters Cluster 1. 102 ligand types 393 ligands Cluster 2. 2 ligand types 7 ligands Cluster 3. 6 ligand types 18 ligands Cluster 4. 3 ligand types 4 ligands Cluster 5. 3 ligand types 7 ligands Cluster 6. 4 ligand types 4 ligands
Representative protein: 6s50A

Structures

PDB		Schematic diagram
6s50A
6s4qA
1rxkB
1mm9A
1moyA
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Cluster 1 contains 102 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: BTN × 72 biotin Biotin PDB codes: 1df8(A), 1luq(A), 1mep(A), 1mk5(A), 1n43(A), 1n9m(A), 1ndj(A), 1nqm(A), 1stp(A), 1swd(A), 1swe(A), 1swg(A), 1swk(A), 1swn(A), 1swp(A), 1swr(A), 1swt(A), 2f01(A), 2gh7(A), 2izf(B), 2izg(B), 2izh(B), 2izi(A), 2izj(A), 2rtd(B), 2rte(B), 2rtf(B), 2rtg(B), 2y3f(A), 3mg5(A), 3rdm(A), 3rdo(A), 3ry2(A), 3wyp(A), 3wyq(A), 3wzn(A), 4ekv(A), 4gd9(A), 4gda(A), 4irw(A), 4yvb(A), 6aul(A), 6j6j(A), 6m9b(A), 6uc3(A), 6udc(A), 6vjk(A), 6vjl(A), 7efc(A), 7efd(A).
		2. Ligand: GOL × 45 glycerin Glycerol PDB codes: 1luq(A), 2bc3(A), 2f01(A), 2gh7(A), 2y3e(A), 2y3f(A), 3mg5(A), 3rdo(A), 3rdq(A), 3rdu(A), 3re5(A), 3re6(A), 3ry2(A), 3t6f(A), 3wyp(A), 3wyq(A), 3wzp(A), 4gda(A), 5k49(A), 5k67(A), 5n89(A), 5vkx(A), 5vl8(A), 5wbb(A), 5wbc(A), 6lng(A), 6s4q(A), 6s50(A), 6t1e(A), 6t30(B), 6ud6(A),
		3. Ligand: SO4 × 21 Sulfate ion PDB codes: 1slf(B), 2izb(A), 2izd(B), 2izk(A), 2rta(A), 2rtc(B), 2rtk(A), 2rtl(A), 2rtm(A), 2wpu(A), 3rdo(A), 3wyp(A), 4dne(A), 4gda(A), 5wba(A), 5wbb(A), 6anx(A), 6esu(A).
		4. Ligand: ACT × 19 Acetate ion PDB codes: 2izk(A), 2rtb(B), 2rth(B), 2rtk(A), 5k49(A), 5wba(A), 5wbc(A), 6anx(A), 6esu(A), 6t1e(A), 6ui0(A), 6uiy(A), 6uiz(A), 6us6(A), 6vob(A), 6vp2(A), 7kby(A).
		5. Ligand: MPD × 12 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 1luq(A), 1n9y(D), 1swu(A), 3ry1(A), 4bx6(B), 4bx7(A).
		6. Ligand: MRD × 11 (4r)-2-Methylpentane-2,4-Diol PDB codes: 1mm9(A), 1moy(A), 1n9y(A), 1nbx(A), 1swu(A), 3ry1(A),
		7. Ligand: HL9 × 10 5-[(3~{a}~{s},4~{s},6~{a}~{r})-2-Oxidanylidene-1,3, 3~{a},4,6,6~{a}-Hexahydrothieno[3,4-D]imidazol- 4-Yl]- ~{N}-(1-Pyridin-4-Ylpiperidin-4-Yl)pentanamide PDB codes: 6t1e(A), 6t1g(A), 6t1k(A), 6t2l(A), 6t2y(A), 6t2z(A), 6t30(B), 6t31(A), 6t32(A).
		8. Ligand: IMI × 9 2-Iminobiotin PDB codes: 1nc9(A), 2izl(B), 2rtl(A), 2rtm(A), 2rtn(B), 2rto(B), 2rtp(B), 2rtq(B), 2rtr(B).
		9. Ligand: PDC × 8 Pyridine-2,6-Dicarboxylic acid PDB codes: 4irw(A),
		10. Ligand: 4IR × 7 {N-(4-{[2-(Amino-Kappan)ethyl]sulfamoyl-Kappan}phenyl)- 5-[(3as,4s,6ar)-2-Oxohexahydro-1h- Thieno[3,4- D]imidazol-4-Yl]pentanamide}(chloro)[(1,2,3,4,5-Eta)- 1,2,3,4,5- Pentamethylcyclopentadienyl]iridium(III) PDB codes: 3pk2(A), 6ess(A), 6gmi(A), 6s4q(A), 6s50(A),
		11. Ligand: ACE-CYS-HIS-PRO-GLN-GLY-PRO-PRO-CYS-NH2 × 6 ACE=Acetyl group, NH2=Amino group. PDB codes: 1sle(B), 1vwf(B), 1vwg(B), 1vwh(B), 1vwo(B), 1vwp(B).
		12. Ligand: BNI × 6 5-(2-Oxo-Hexahydro-Thieno[3,4-D]imidazol-6-Yl)- Pentanoic acid (4-Nitro-Phenyl)-Amide PDB codes: 1i9h(A), 1rxh(A), 1rxj(A), 1rxk(A),
		13. Ligand: EDO × 6 1,2-Ethanediol PDB codes: 4bx5(A), 6t1k(A), 6t2l(A), 6t2y(A).
		14. Ligand: HIS-PRO-GLN-GLY-PRO-PRO-CYS-LYS-NH2 × 6 NH2=Amino group. PDB codes: 1vwi(B), 1vwj(B), 1vwk(B), 1vwl(B), 1vwq(B), 1vwr(B).
		15. Ligand: KM3 × 6 {N-(4-{Bis[(pyridin-2-Yl-Kappan)methyl]amino- Kappan}butyl)-5-[(3as,4s,6ar)-2-Oxohexahydro-1h- Thieno[3,4-D]imidazol-4-Yl]pentanamide}iron(3+) PDB codes: 6vp1(A), 6vp2(A), 6vp3(A), 7kbz(A),
		16. Ligand: ACE-CYS-HIS-PRO-GLN-PHE-CYS-NH2 × 5 ACE=Acetyl group, NH2=Amino group. PDB codes: 1vwb(B), 1vwc(B), 1vwd(B), 1vwm(B), 1vwn(B).
		17. Ligand: GLL × 5 Glycoluril PDB codes: 2izk(A), 2rth(B), 2rti(B), 2rtj(A), 2rtk(A).
		18. Ligand: PEG × 5 Di(hydroxyethyl)ether PDB codes: 4cpi(A), 5to2(D), 6udb(A),
		19. Ligand: ZOF × 5 6-({5-[(2e,3as,4s,6ar)-2-Iminohexahydro-1h-Thieno[3,4- D]imidazol-4- Yl]pentanoyl}amino)hexanoic acid PDB codes: 3wzp(A), 3wzq(A), 3x00(A).
		20. Ligand: 1PE × 4 Pentaethylene glycol PDB codes: 3rdm(A), 3rds(A), 3rdu(A), 3re5(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 3rdo(A), 3rdq(A), 3wyq(A).
		2. Ligand: 4IR × 4 {N-(4-{[2-(Amino-Kappan)ethyl]sulfamoyl-Kappan}phenyl)- 5-[(3as,4s,6ar)-2-Oxohexahydro-1h- Thieno[3,4- D]imidazol-4-Yl]pentanamide}(chloro)[(1,2,3,4,5-Eta)- 1,2,3,4,5- Pentamethylcyclopentadienyl]iridium(III) PDB codes: 6s4q(A), 6s50(A),

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 8 glycerin Glycerol PDB codes: 2f01(A), 2gh7(A), 3mg5(A), 3wyq(A), 3wzo(A), 6t1e(A), 6t2l(A), 6ud6(A).
		2. Ligand: SO4 × 4 Sulfate ion PDB codes: 2g5l(A), 3wyq(A), 5f2b(A).
		3. Ligand: PDC × 2 Pyridine-2,6-Dicarboxylic acid PDB codes: 4irw(A),
_Cl		4. Metal: _CL × 2 PDB codes: 3t6l(A), 4ekv(A).
		5. Ligand: ACT × 1 Acetate ion PDB code: 6uiy(A).
		6. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6t1k(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3mg5(A), 3wyq(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 6qsy(A).
		3. Ligand: P6G × 1 Hexaethylene glycol PDB code: 3wzo(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2g5l(A), 2y3f(A), 3rdu(A), 3wyq(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 3t6l(A), 6t2y(A).
		3. Ligand: SO3 × 1 Sulfite ion PDB code: 5b5g(A).

Cluster 6 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2g5l(B).
		2. Ligand: SO3 × 1 Sulfite ion PDB code: 5b5g(A).
_Ir		3. Metal: _IR × 1 PDB code: 6esu(A).
_Na		4. Metal: _NA × 1 PDB code: 3rdq(A).