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Ligand clusters for UniProt code P21816

Ligand clusters for P21816: Cysteine dioxygenase type 1 from Rattus norvegicus

Top 6 (of 12) ligand clusters
Cluster 1.
12 ligand types
88 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 3elnA  
JSmol
 

Structures

PDB   Schematic diagram
3elnA    
4iepA    
4xezA    
4piyA    
4xetA    
 more ...

 

 Cluster 1 contains 12 ligand types

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Ligand Description

_Fe
 
1. Metal: _FE × 26
PDB codes: 2gh2(A), 4ies(A), 4pix(A), 4piy(A), 4piz(A), 4pjy(A), 4xet(A), 4xez(A), 4xf0(A), 4xf1(A), 4xf3(A), 4xf4(A), 4xf9(A), 4xfa(A), 4xfb(A), 4xfc(A), 4xff(A), 4xfg(A), 4xfh(A), 4xfi(A), 5i0s(A), 5i0t(A), 5i0u(A), 6u1m(A), 6u4s(A), 6u4v(A).


 
2. Ligand: CYS × 9
cysteine
PDB codes: 4iev(A), 4iew(A), 4jto(A), 4xf0(A), 4xf1(A), 4xf3(A), 4xfg(A), 4xfh(A), 4z82(A).


 
3. Ligand: SIN × 1
succinic acid
Succinic acid
PDB code: 4yni(A).

Fe2
 
4. Metal: FE2 × 24
PDB codes: 3eln(A), 4ieo(A), 4iep(A), 4ieq(A), 4ier(A), 4iet(A), 4ieu(A), 4iev(A), 4iew(A), 4iex(A), 4iey(A), 4iez(A), 4jtn(A), 4jto(A), 4kwj(A), 4kwk(A), 4kwl(A), 4ubg(A), 4ubh(A), 4ysf(A), 4yyo(A), 4z82(A), 5efu(A), 5ezw(A).

_Cl
 
5. Metal: _CL × 7
PDB codes: 4pix(A), 4xf0(A), 4xfb(A), 4xfc(A), 4xff(A), 4xfg(A), 4yyo(A).


 
6. Ligand: 2CO × 6
S-Hydroperoxycysteine
PDB codes: 3eln(A), 4ier(A), 4ies(A), 4iet(A), 4ieu(A), 4iey(A).


 
7. Ligand: HCS × 6
2-Amino-4-Mercapto-Butyric acid
PDB codes: 4piy(A), 4piz(A), 4xf4(A), 4xf9(A), 4xfa(A), 4xfi(A).


 
8. Ligand: THJ × 5
Thiosulfate
PDB codes: 4xez(A), 4xff(A), 5ezw(A), 5i0s(A), 5i0t(A).


 
9. Ligand: 3SS × 1
3-Disulfanylpropanoic acid
PDB code: 4kwl(A).


 
10. Ligand: ACT × 1
Acetate ion
PDB code: 6u4l(A).


 
11. Ligand: CSS × 1
S-Mercaptocysteine
PDB code: 4kwk(A).


 
12. Ligand: DCY × 1
D-Cysteine
PDB code: 5i0u(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 2gh2(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 2
PDB codes: 4ubg(A), 4ubh(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 3
PDB codes: 4ubg(A), 4ubh(A), 4yni(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 2
PDB codes: 4ubg(A), 4ubh(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 2
PDB codes: 4ubg(A), 4ubh(A).

 

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