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Ligand clusters for UniProt code P18548

Ligand clusters for P18548: Deacetoxycephalosporin C synthase from Streptomyces clavuligerus

3 ligand clusters
Cluster 1.
13 ligand types
29 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
2 ligands
Representative protein: 1unbA  
JSmol
 

Structures

PDB   Schematic diagram
1unbA    
1dcsA    
1rxgA    
1e5iA    
2jb8A    
 more ...

 

 Cluster 1 contains 13 ligand types

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Ligand Description


 
1. Ligand: AKG × 2
2-Oxoglutaric acid
PDB codes: 1e5i(A), 1rxg(A).


 
2. Ligand: P1C × 2
Deacetoxycephalosporin-C
PDB codes: 1uog(A), 1w2o(A).

_Fe
 
3. Metal: _FE × 5
PDB codes: 1rxf(A), 1w2a(X), 1w2n(A), 1w2o(A), 2jb8(A).


 
4. Ligand: SIN × 2
succinic acid
Succinic acid
PDB codes: 1e5h(A), 1uo9(A).


 
5. Ligand: PNN × 1
benzylpenicillin
Penicillin g
PDB code: 1uof(A).


 
6. Ligand: COI × 1
2-Oxo-4-Methylpentanoic acid
PDB code: 1hjf(A).


 
7. Ligand: KIV × 1
3-Methyl-2-Oxobutanoic acid
PDB code: 1hjg(A).


 
8. Ligand: PN1 × 1
(2s,6r)-6-{[(2r)-2-Amino-2-Phenylethanoyl] amino}-3,3-Dimethyl-7-Oxo-4-Thia-1-
Azabicyclo[3.2.0]heptane-2-Carboxylic acid
PDB code: 1w2n(A).


 
9. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 1w2a(X),

Fe2
 
10. Metal: FE2 × 9
PDB codes: 1e5h(A), 1e5i(A), 1hjf(A), 1hjg(A), 1unb(A), 1uo9(A), 1uob(A), 1uof(A), 1uog(A).


 
11. Ligand: AKG-PN1 × 1
AKG=2-Oxoglutaric acid, PN1=(2s,6r)-6-{[(2r)-2-Amino-2-Phenylethanoyl]amino}-3,3- Dimethyl-7-Oxo-4-Thia-1-
Azabicyclo[3.2.0]heptane-2- Carboxylic acid.
PDB code: 1unb(A).


 
12. Ligand: HKV × 1
4,5-Dioxopentanoic acid
PDB code: 2jb8(A).


 
13. Ligand: PNN-AKG × 1
PNN=Penicillin g, AKG=2-Oxoglutaric acid.
PDB code: 1uob(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 1dcs(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 1dcs(A), 1rxg(A).

 

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