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Ligand clusters for UniProt code P11609

Ligand clusters for P11609: Antigen-presenting glycoprotein CD1d1 from Mus musculus

Top 6 (of 21) ligand clusters


Cluster 1. 77 ligand types 132 ligands		Cluster 2. 14 ligand types 97 ligands		Cluster 3. 5 ligand types 97 ligands		Cluster 4. 3 ligand types 8 ligands		Cluster 5. 3 ligand types 91 ligands		Cluster 6. 3 ligand types 9 ligands

Representative protein: 3arbA

Structures

PDB		Schematic diagram

3arbA
3areA
3qi9A
3to4A
3he7A
		more ...

Cluster 1 contains 77 ligand types (of which only 20 are listed. Click for all)

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Ligand

Description

1. Ligand: PLM × 27

palmitic acid

Palmitic acid

PDB codes: 2fik(A), 2q7y(A), 3g08(A), 3gml(A), 3gmm(A), 3gmn(A), 3gmo(A), 3gmp(A), 3gmq(A), 3gmr(A), 3ma7(C), 4elm(A), 5efi(A), 5tw2(A), 5tw5(A), 5vcj(A), 6c5m(A), 6c69(A), 6c6h(A), 6c6j(A), 6cw6(A), 6cw9(A), 6cwb(A), 6cwe(A), 6cx5(A), 6cx7(A), 6ojp(A).

2. Ligand: CIT × 1

citric acid

Citric acid

PDB code: 5efi(A).

3. Ligand: DMS × 1

dimethyl sulfoxide

Dimethyl sulfoxide

PDB code: 3ilp(A).

4. Ligand: GOL × 1

glycerin

Glycerol

PDB code: 6omg(A).

5. Ligand: CIS × 6

(15z)-N-((1s,2r,3e)-2-Hydroxy-1-{[(3-O-Sulfo-Beta-D- Galactopyranosyl)oxy]methyl}heptadec-3-
Enyl)tetracos- 15-Enamide

PDB codes: 2akr(A), 4apq(A), 4ei5(A), 4mng(A), 4mq7(A).

6. Ligand: AGH × 4

N-{(1s,2r,3s)-1-[(Alpha-D-Galactopyranosyloxy)methyl]- 2,3-Dihydroxyheptadecyl}hexacosanamide

PDB codes: 3he6(A), 3he7(A), 3to4(A), 6bnk(A).

7. Ligand: 7LP × 3

(5r,6s,7s)-5,6-Dihydroxy-7-(Octanoylamino)-N-(6- Phenylhexyl)-8-{[(2s,3r,4s,5r,6r)-3,4,5-
Trihydroxy-6- (Hydroxymethyl)tetrahydro-2h-Pyran-2-Yl]oxy}octanamide

PDB codes: 5tw2(A), 6cwe(A), 6ojp(A).

8. Ligand: EM4 × 3

N-[(2s,3s,4r)-3,4-Dihydroxy-8-Oxo-8-[(6-Phenylhexyl) amino]-1-{[(2s,3r,4s,5r,6r)-3,4,5-Trihydroxy-
6- (Hydroxymethyl)tetrahydro-2h-Pyran-2-Yl]oxy}octan-2- Yl]hexacosanamide

PDB codes: 6c6e(A), 6cx9(A), 6cxe(A).

9. Ligand: PBS × 3

(2s,3s,4r)-N-Octanoyl-1-[(Alpha-D-Galactopyranosyl) oxy]-2-Amino-Octadecane-3,4-Diol

PDB codes: 1z5l(A), 3gmp(A), 6cw6(A).

10. Ligand: UNL × 3

Unknown ligand

PDB codes: 6oor(A),

11. Ligand: 07P × 2

N-[(2s,3r)-10-[(1r,2r)-2-Decylcyclopropyl]-1-(Alpha-D- Galactopyranosyloxy)-3-Hydroxydecan-2-
Yl]hexacosanamide

PDB codes: 3tvm(A),

12. Ligand: 1O2 × 2

(2s)-3-(Alpha-D-Galactopyranosyloxy)-2- (Hexadecanoyloxy)propyl (9z)-Octadec-9-Enoate

PDB codes: 3ilq(C), 3o9w(A).

13. Ligand: 3TF × 2

(2s)-1-(Alpha-D-Glucopyranosyloxy)-3-(Hexadecanoyloxy) propan-2-Yl (11z)-Octadec-11-Enoate

PDB codes: 3t1f(A), 3ta3(A).

14. Ligand: 7LM × 2

N-[(2s,3s,4r)-1-(Alpha-D-Galactopyranosyloxy)-3,4- Dihydroxy-16-Phenylhexadecan-2-Yl]octanamide

PDB codes: 5tw5(A), 6cw9(A).

15. Ligand: C8P × 2

N-{(1s,2s,3r)-1-[(Alpha-D-Galactopyranosyloxy)methyl]- 2,3-Dihydroxyheptadecyl}-8-Phenyloctanamide

PDB codes: 3gmm(A), 3gmr(A).

16. Ligand: DB6 × 2

(11e,14e)-N-[(2s,3s,4r)-1-(Alpha-D-Glucopyranosyloxy)- 3,4-Dihydroxyoctadecan-2-Yl]icosa-11,14-
Dienamide

PDB codes: 3arg(A), 3rug(A).

17. Ligand: ELM × 2

N-[(2s,3s,4r)-3,4-Dihydroxy-8-Oxo-8-[(6-Phenylhexyl) amino]-1-{[(2s,3r,4s,5r,6r)-3,4,5-Trihydroxy-
6- (Hydroxymethyl)tetra hydro-2h-Pyran-2-Yl]oxy}octan-2- Yl]dodecanamide

PDB codes: 6c69(A), 6cx7(A).

18. Ligand: ELS × 2

N-[(2s,3s,4r)-3,4-Dihydroxy-8-Oxo-8-[(4-Pentylphenyl) amino]-1-{[(2s,3r,4s,5r,6r)-3,4,5-Trihydroxy-
6- (Hydroxymethyl)tetr ahydro-2h-Pyran-2-Yl]oxy}octan-2- Yl]hexacosanamide

PDB codes: 6c6f(A), 6cxf(A).

19. Ligand: EMG × 2

N-[(2s,3s,4r)-3,4-Dihydroxy-8-Oxo-8-[(6-Phenylhexyl) amino]-1-{[(2s,3r,4s,5r,6r)-3,4,5-Trihydroxy-
6- (Hydroxymethyl)tetrahydro-2h-Pyran-2-Yl]oxy}octan-2- Yl]icosanamide

PDB codes: 6c6c(A), 6cxa(A).

20. Ligand: FEE × 2

N-{(1s,2s,3r)-1-[(Alpha-D-Galactopyranosyloxy)methyl]- 2,3-Dihydroxyoctyl}tetracosanamide

PDB codes: 3arb(A), 3g08(A).

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Cluster 2 contains 14 ligand types

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Ligand

Description

1. Ligand: NAG × 7

n-acetylglucosamine

2-Acetamido-2-Deoxy-Beta-D-Glucopyranose

PDB codes: 2akr(A), 3arb(A), 3are(A), 3rug(A), 3ubx(A), 4mng(A), 4y2d(A).

2. Ligand: NAG-NAG × 32

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.

PDB codes: 1z5l(A), 2fik(A), 3arb(A), 3ard(A), 3arf(A), 3arg(A), 3g08(A), 3he6(A), 3he7(A), 3ilp(A), 3ilq(C), 3ma7(C), 3qi9(A), 3scm(A), 3sda(A), 3sdc(A), 3sdd(A), 3t1f(A), 3tn0(A), 3to4(A), 4elm(A), 4mx7(A), 4y4f(A), 4y4h(A), 4zak(A), 5tw5(A), 6bnk(A), 6bnl(A), 6c6a(A), 6c6e(A), 6cyw(A), 6mss(C).

3. Ligand: NAG-NAG-FUC × 25

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.

PDB codes: 3o8x(A), 3o9w(A), 3qux(A), 3quy(A), 3quz(A), 3ta3(A), 3tvm(A), 4irj(A), 4y4k(A), 5tw2(A), 6c69(A), 6cw6(A), 6cw9(A), 6cwb(A), 6cwe(A), 6cx5(A), 6cx7(A), 6cx9(A), 6cxe(A), 6miv(A), 6miy(A), 6mj4(A), 6mjj(A), 6omg(A).

4. Ligand: NAG-NAG-BMA-MAN-MAN-FUC × 15

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose.

PDB codes: 3gml(A), 3gmm(A), 3gmn(A), 3gmo(A), 3gmp(A), 3gmq(A), 3gmr(A), 5efi(A), 5vcj(A), 6c5m(A), 6c6c(A), 6c6f(A), 6c6h(A), 6c6j(A), 6ojp(A).

5. Ligand: NAG-NAG-BMA-MAN-FUC × 4

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose.

PDB codes: 5fkp(A), 6cxa(A), 6cxf(A), 6mji(A).

6. Ligand: NAG-NAG-BMA-FUC × 3

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, FUC=Alpha-L-Fucopyranose.

PDB codes: 6mj6(A), 6mja(A), 6mjq(A).

7. Ligand: NAG-NAG-BMA × 2

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.

PDB codes: 4apq(A), 4ei5(E).

8. Ligand: NAG-NAG-BMA-MAN-MAN × 2

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.

PDB codes: 2gaz(A), 2q7y(A).

9. Ligand: NAG-NAG-FUL × 2

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUL=Beta-L-Fucopyranose.

PDB codes: 4irs(A), 4y16(A).

10. Ligand: NAG-NAG-BMA-FUL × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, FUL=Beta-L-Fucopyranose.

PDB code: 3rtq(A).

11. Ligand: NAG-NAG-BMA-MAN × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.

PDB code: 4ei5(A).

12. Ligand: NAG-NAG-GLC-MAN-BMA-FUC × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, BMA=Beta-D-Mannopyranose, FUC=Alpha-L-Fucopyranose.

PDB code: 3au1(A).

13. Ligand: NAG-NAG-MAN-FUL × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, FUL=Beta-L-Fucopyranose.

PDB code: 3rzc(A).

14. Ligand: NAG-NAG-MAN-MAN-MAN-FUC × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, MAN=Alpha-D-Mannopyranose.

PDB code: 1zhn(A).

Cluster 3 contains 5 ligand types

Selection shortcuts: select all/none invert selection.

Ligand

Description

1. Ligand: NAG × 55

n-acetylglucosamine

2-Acetamido-2-Deoxy-Beta-D-Glucopyranose

PDB codes: 1z5l(A), 1zhn(A), 2akr(A), 2fik(A), 2gaz(A), 3arg(A), 3g08(A), 3he6(A), 3he7(A), 3ilp(A), 3ilq(C), 3ma7(C), 3qi9(A), 3qux(A), 3quy(A), 3quz(A), 3scm(A), 3sda(A), 3sdc(A), 3sdd(A), 3t1f(A), 3tn0(A), 3to4(A), 4elm(A), 4irj(A), 4mng(A), 4mq7(A), 4mx7(A), 4y2d(A), 4y4f(A), 4y4k(A), 4zak(A), 5fkp(A), 5tw2(A), 5tw5(A), 5vcj(A), 6bnk(A), 6bnl(A), 6c69(A), 6c6a(A), 6c6c(A), 6c6e(A), 6c6f(A), 6c6h(A), 6c6j(A), 6cw6(A), 6cwb(A), 6cx7(A), 6cx9(A), 6cxa(A), 6cxe(A), 6cxf(A), 6cyw(A), 6mss(C), 6ojp(A).

2. Ligand: NAG-NAG × 34

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.

PDB codes: 2q7y(A), 3arb(A), 3ard(A), 3are(A), 3arf(A), 3gmr(A), 3o8x(A), 3o9w(A), 3rtq(A), 3rug(A), 3rzc(A), 3ta3(A), 3tvm(A), 3ubx(A), 4ei5(A), 4irs(A), 4y16(A), 4y4h(A), 5efi(A), 6c5m(A), 6cw9(A), 6cwe(A), 6cx5(A), 6miv(A), 6miy(A), 6mj4(A), 6mj6(A), 6mja(A), 6mji(A), 6mjj(A), 6mjq(A), 6omg(A).

3. Ligand: NAG-NAG-BMA-MAN-MAN × 6

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.

PDB codes: 3gml(A), 3gmm(A), 3gmn(A), 3gmo(A), 3gmp(A), 3gmq(A).

4. Ligand: NAG-NAG-BMA-MAN × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.

PDB code: 4apq(A).

5. Ligand: NAG-NAG-GLC-MAN-MAN × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GLC=Alpha-D-Glucopyranose, MAN=Alpha-D-Mannopyranose.

PDB code: 3au1(A).

Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.

Ligand

Description

1. Ligand: GOL × 6

glycerin

Glycerol

PDB codes: 3qi9(A), 3sda(A), 3t1f(A), 6mjj(A), 6ojp(A), 6omg(A).

2. Ligand: NAG-NAG-BMA-MAN-MAN × 1

NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.

PDB code: 6ojp(A).

3. Ligand: PEG × 1

Di(hydroxyethyl)ether

PDB code: 3arb(A).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.

Ligand

Description

1. Ligand: NAG × 80

n-acetylglucosamine

2-Acetamido-2-Deoxy-Beta-D-Glucopyranose

PDB codes: 1z5l(A), 2akr(A), 2fik(A), 2gaz(A), 2q7y(A), 3au1(A), 3g08(A), 3gml(A), 3gmm(A), 3gmn(A), 3gmo(A), 3gmp(A), 3gmq(A), 3he6(A), 3he7(A), 3ilq(C), 3o8x(A), 3o9w(A), 3qi9(A), 3qux(A), 3quy(A), 3quz(A), 3rtq(A), 3rug(A), 3scm(A), 3sda(A), 3sdc(A), 3sdd(A), 3t1f(A), 3ta3(A), 3tn0(A), 3to4(A), 3tvm(A), 4ei5(A), 4elm(A), 4irj(A), 4irs(A), 4mng(A), 4mx7(A), 4y16(A), 4y2d(A), 4y4h(A), 4y4k(A), 4zak(A), 5efi(A), 5fkp(A), 5tw5(A), 5vcj(A), 6bnk(A), 6bnl(A), 6c5m(A), 6c69(A), 6c6a(A), 6c6c(A), 6c6e(A), 6c6f(A), 6c6h(A), 6c6j(A), 6cw6(A), 6cw9(A), 6cwb(A), 6cwe(A), 6cx5(A), 6cx7(A), 6cx9(A), 6cxa(A), 6cxe(A), 6cxf(A), 6cyw(A), 6miv(A), 6mj4(A), 6mj6(A), 6mja(A), 6mji(A), 6mjj(A), 6mjq(A), 6mss(C), 6ojp(A).