Ligand clusters for UniProt code P0A444

Ligand clusters for P0A444: Photosystem II protein D1 1 from Thermosynechococcus elongatus (strain BP-1)

		Top 6 (of 10) ligand clusters Cluster 1. 19 ligand types 672 ligands Cluster 2. 4 ligand types 30 ligands Cluster 3. 2 ligand types 4 ligands Cluster 4. 3 ligand types 45 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2axtA

Structures

PDB		Schematic diagram
2axtA
7nhoA
5tisA
5e79A
5kaiA
		more ...

Cluster 1 contains 19 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCR × 39 beta carotene Beta-Carotene PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A).
		2. Ligand: DMS × 6 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(A), 5zzn(A),
		3. Ligand: CLA × 191 Chlorophyll a PDB codes: 1s5l(A), 1w5c(A), 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A),
		4. Ligand: DGD × 96 Digalactosyl diacyl glycerol (dgdg) PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A),
		5. Ligand: LHG × 80 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A).
		6. Ligand: LMG × 58 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A).
		7. Ligand: PHO × 58 Pheophytin a PDB codes: 1s5l(A), 1w5c(A), 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A),
		8. Ligand: PL9 × 47 2,3-Dimethyl-5-(3,7,11,15,19,23,27,31,35-Nonamethyl-2, 6,10,14,18,22,26,30,34- Hexatriacontanonaenyl-2,5- Cyclohexadiene-1,4-Dione-2,3-Dimethyl-5-Solanesyl-1,4- Benzoquinone PDB codes: 1s5l(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A), 7nhp(A), 7nhq(A).
		9. Ligand: SQD × 43 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A),
		10. Ligand: LMT × 23 Dodecyl-Beta-D-Maltoside PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5h2f(A), 5zzn(A),
		11. Ligand: UNL × 14 Unknown ligand PDB codes: 4pj0(A), 5h2f(A), 5kaf(A), 5kai(A), 5tis(A), 5zzn(A),
		12. Ligand: UNK × 4 PDB codes: 2axt(A),
		13. Ligand: LFA × 3 Eicosane PDB codes: 5mx2(A),
		14. Ligand: MGE × 3 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB codes: 2axt(A),
		15. Ligand: HTG × 2 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 5h2f(A), 5zzn(A).
		16. Ligand: MST × 2 2-T-Butylamino-4-Ethylamino-6-Methylthio-S-Triazine PDB codes: 3prq(A), 3prr(A).
		17. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 3kzi(A).
		18. Ligand: PQ9 × 1 5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27- Heptamethyloctacosa-2,6,10,14,18,22,26-Heptaenyl]- 2,3- Dimethylbenzo-1,4-Quinone PDB code: 2axt(A).
		19. Ligand: SO4 × 1 Sulfate ion PDB code: 4pj0(A).

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mn		1. Metal: _MN × 6 PDB codes: 1w5c(A), 7nho(A), 7nhp(A), 7nhq(A).
		2. Ligand: OEX × 14 Ca-Mn4-O5 cluster PDB codes: 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5tis(A), 5zzn(A).
		3. Ligand: OEC × 9 Oxygen evolving system PDB codes: 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A).
		4. Ligand: BCT-OEC × 1 BCT=Bicarbonate ion, OEC=Oxygen evolving system. PDB code: 1s5l(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 3prq(A), 3prr(A), 5h2f(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5zzn(A).

Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Fe		1. Metal: _FE × 1 PDB code: 5mx2(A).
		2. Ligand: BCT × 26 Bicarbonate ion PDB codes: 1s5l(A), 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4pj0(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A), 5h2f(A), 5kaf(A), 5kai(A), 5mx2(A), 5tis(A), 5zzn(A), 7nho(A).
Fe2		3. Metal: FE2 × 18 PDB codes: 1w5c(A), 2axt(A), 3bz1(A), 3bz2(A), 3kzi(A), 3prq(A), 3prr(A), 4fby(A), 4ixq(A), 4ixr(A), 4pbu(A), 4rvy(A), 4tnh(A), 4tni(A), 4tnj(A), 4tnk(A), 5e79(A), 5e7c(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(A), 5zzn(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5h2f(A).