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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P03472

Ligand clusters for P03472: Neuraminidase from Influenza A virus (strain A/Tern/Australia/G70C/1975 H11N9)

Top 6 (of 17) ligand clusters
Cluster 1.
7 ligand types
46 ligands
 Cluster 2.
28 ligand types
47 ligands
 Cluster 3.
5 ligand types
47 ligands
 Cluster 4.
9 ligand types
14 ligands
 Cluster 5.
1 ligand type
1 ligand
 Cluster 6.
2 ligand types
47 ligands
Representative protein: 6crdA  
JSmol
 

Structures

PDB   Schematic diagram
6crdA    
1inyA    
1nmcN    
6nn9A    
5nn9A    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 16
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 1iny(A), 1l7f(A), 1l7g(A), 1l7h(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwj(A), 2qwk(A), 3nn9(A), 6mcx(A).


 
2. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 10
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 1a14(N), 1bji(A), 1nca(N), 1ncb(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2qwi(A).


 
3. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 10
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 1mwe(A), 2c4a(A), 3w09(A), 4dgr(A), 5w2w(A), 5w2y(A), 6crd(A), 6d3b(A), 6hcx(A), 6heb(A).


 
4. Ligand: NAG-NAG-MAN-MAN-MAN-MAN-MAN × 4
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4nn9(A), 5nn9(A), 6nn9(A), 7nn9(A).


 
5. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4weg(A), 5w26(A), 5w2u(A).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 6hfc(A), 6hg0(A).


 
7. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 2c4l(A).

 

 Cluster 2 contains 28 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: SIA × 2
N-Acetyl-Alpha-Neuraminic acid
PDB codes: 2c4a(A), 2c4l(A).


 
2. Ligand: GOL × 8
glycerin
Glycerol
PDB codes: 3w09(A), 6hcx(A), 6heb(A), 6hfc(A), 6hg0(A), 6mcx(A),


 
3. Ligand: BCZ × 3
peramivir
3-(1-Acetylamino-2-Ethyl-Butyl)-4-Guanidino-2-Hydroxy- Cyclopentanecarboxylic acid
PDB codes: 1l7f(A), 1l7g(A), 1l7h(A).


 
4. Ligand: ZMR × 3
zanamivir
Zanamivir
PDB codes: 1nnc(A), 2qwe(A), 6hcx(A).


 
5. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1nnb(A).


 
6. Ligand: ABW × 1
5-[1-(Acetylamino)-3-Methylbutyl]-2,5-Anhydro-3,4- Dideoxy-4-(Methoxycarbonyl)pentonic acid
PDB code: 1xog(A).


 
7. Ligand: ABX × 1
5-[1-(Acetylamino)-3-Methylbutyl]-4-(Methoxycarbonyl) proline
PDB code: 1xoe(A).


 
8. Ligand: SIA × 3
N-Acetyl-Alpha-Neuraminic acid
PDB codes: 1mwe(A), 2qwb(A), 6hg0(A).


 
9. Ligand: G39 × 3
(3r,4r,5s)-4-(Acetylamino)-5-Amino-3-(Pentan-3-Yloxy) cyclohex-1-Ene-1-Carboxylic acid
PDB codes: 2qwh(A), 2qwk(A), 6heb(A).


 
10. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 2qwc(A).


 
11. Ligand: G20 × 2
5-N-Acetyl-4-Guanidino-6-Methyl(propyl) carboxamide-4, 5-Dihydro-2h-Pyran-2-Carboxylic acid
PDB codes: 2qwf(A), 2qwi(A).


 
12. Ligand: G28 × 2
5-N-Acetyl-4-Amino-6-Diethyl carboxamide-4,5-Dihydro- 2h-Pyran-2-Carboxylic acid
PDB codes: 2qwg(A), 2qwj(A).


 
13. Ligand: PO4 × 2
Phosphate ion
PDB codes: 4dgr(A), 6hg0(A).


 
14. Ligand: 3LV × 1
4-[2,2-Bis(hydroxymethyl)-5-Oxopyrrolidin-1-Yl]-3- [(Dipropylamino)methyl]benzoic acid
PDB code: 4dgr(A).


 
15. Ligand: 4AM × 1
4-Amino-2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 2qwd(A).


 
16. Ligand: 9S4 × 1
(2~{s},3~{r},4~{r},5~{r})-3-Acetamido-2-[(2~{s})-2,3- Bis(oxidanyl)propyl]-5-Fluoranyl-4-Oxidanyl-
2,3,4,5- Tetrahydropyran-1-Ium-6-Carboxylic acid
PDB code: 5w2u(A).


 
17. Ligand: 9S7 × 1
5-Acetamido-2,6-Anhydro-3,5,8-Trideoxy-3-Fluoro-D- Threo-L-Galacto-Nononic acid
PDB code: 5w2w(A).


 
18. Ligand: 9SD × 1
(2~{r},3~{r},4~{r},5~{r})-3-Acetamido-2-[(1~{r})-1,3- Bis(oxidanyl)propyl]-5-Fluoranyl-4-Oxidanyl-
2,3,4,5- Tetrahydropyran-1-Ium-6-Carboxylic acid
PDB code: 5w2w(A).


 
19. Ligand: 9SJ × 1
5-Acetamido-2,6-Anhydro-3,5,7-Trideoxy-3-Fluoro-D- Threo-L-Galacto-Nononic acid
PDB code: 5w2u(A).


 
20. Ligand: 9T1 × 1
5-Acetamido-2,6-Anhydro-3,5,9-Trideoxy-3-Fluoro-D- Erythro-L-Gluco-Non-4-Ulosonic acid
PDB code: 5w2y(A).

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 Cluster 3 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG × 39
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1a14(N), 1bji(A), 1iny(A), 1l7f(A), 1l7g(A), 1l7h(A), 1mwe(A), 1nca(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2c4a(A), 2c4l(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwi(A), 2qwj(A), 2qwk(A), 3nn9(A), 3w09(A), 4nn9(A), 4weg(A), 5nn9(A), 5w26(A), 5w2u(A), 5w2w(A), 5w2y(A), 6d3b(A), 6mcx(A), 6nn9(A), 7nn9(A).


 
2. Ligand: NAG-NAG × 5
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 1ncb(N), 6hcx(A), 6heb(A), 6hfc(A), 6hg0(A).


 
3. Ligand: BGC × 1
Beta-D-Glucopyranose
PDB code: 4dgr(A).


 
4. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 4dgr(A).


 
5. Ligand: NAG-NAG-BMA-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6crd(A).

 

 Cluster 4 contains 9 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: SIA × 2
N-Acetyl-Alpha-Neuraminic acid
PDB codes: 2c4a(A), 2c4l(A).


 
2. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 3w09(A), 6d3b(A), 6hfc(A).


 
3. Ligand: SIA × 3
N-Acetyl-Alpha-Neuraminic acid
PDB codes: 1mwe(A), 2qwb(A), 6hg0(A).


 
4. Ligand: 9SG × 1
(2r,3r,5r,6r)-5-Acetamido-2,3-Bis(fluoranyl)-6-[(1r, 2r)-1,2,3-Tris(oxidanyl)propyl]oxane-2-
Carboxylic acid
PDB code: 5w26(A).


 
5. Ligand: 9SM × 1
(2r,3r,4r,5r,6s)-5-Acetamido-6-[(2s)-2,3-Bis(oxidanyl) propyl]-2,3-Bis(fluoranyl)-4-Oxidanyl-Oxane-
2- Carboxylic acid
PDB code: 5w2u(A).


 
6. Ligand: 9SP × 1
(2r,3r,4r,5r,6r)-5-Acetamido-6-[(1r)-1,3-Bis(oxidanyl) propyl]-2,3-Bis(fluoranyl)-4-Oxidanyl-Oxane-
2- Carboxylic acid
PDB code: 5w2w(A).


 
7. Ligand: 9T7 × 1
(2r,3r,4r,5r,6r)-5-Acetamido-6-[(1r,2r)-1,2- Bis(oxidanyl)propyl]-2,3-Bis(fluoranyl)-4-Oxidanyl-
Oxane-2-Carboxylic acid
PDB code: 5w2y(A).


 
8. Ligand: PO4 × 1
Phosphate ion
PDB code: 6hfc(A).


 
9. Ligand: SFJ × 1
(2r,3r,4r,5r,6r)-5-Acetamido-2,3-Difluoro-4-Hydroxy-6- [(1r,2r)-1,2,3-Trihydroxypropyl]tetrahydro-
2h-Pyran-2- Carboxylic acid
PDB code: 4weg(A).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6crd(A).

 

 Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 19
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1a14(N), 1bji(A), 1iny(A), 1mwe(A), 1nca(N), 1ncb(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2qwi(A), 3nn9(A), 4nn9(A), 5nn9(A), 6mcx(A), 6nn9(A), 7nn9(A).


 
2. Ligand: NAG-NAG × 28
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 1l7f(A), 1l7g(A), 1l7h(A), 2c4a(A), 2c4l(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwj(A), 2qwk(A), 3w09(A), 4dgr(A), 4weg(A), 5w26(A), 5w2u(A), 5w2w(A), 5w2y(A), 6crd(A), 6d3b(A), 6hcx(A), 6heb(A), 6hfc(A), 6hg0(A).

 

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