Ligand clusters for UniProt code P02883

Ligand clusters for P02883: Thaumatin I OS=Thaumatococcus daniellii OX=4621 PE=1 SV=2

		Top 6 (of 25) ligand clusters Cluster 1. 12 ligand types 69 ligands Cluster 2. 6 ligand types 99 ligands Cluster 3. 6 ligand types 19 ligands Cluster 4. 2 ligand types 15 ligands Cluster 5. 3 ligand types 4 ligands Cluster 6. 4 ligand types 4 ligands
Representative protein: 1kwnA

Structures

PDB		Schematic diagram
1kwnA
3wxsA
6srjA
6sroA
6srpA
		more ...

Cluster 1 contains 12 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 48 glycerin Glycerol PDB codes: 2vhk(A), 2vhr(A), 2vi2(A), 2vi3(A), 2vi4(A), 3al7(A), 3ald(A), 3v7v(A), 3v82(A), 3v84(A), 3v87(A), 3v88(A), 3v8a(A), 3vhf(A), 4dc5(A), 4dc6(A), 4zg3(A), 4zxr(A), 5kvw(A), 5kvx(A), 5kvz(A), 5tcl(A), 5x9l(A), 5x9m(A), 5yyp(A), 5yyq(A), 5yyr(A), 6fj6(A),
		2. Ligand: ASC × 2 ascorbic acid Ascorbic acid PDB codes: 4tvt(A),
		3. Ligand: HM6 × 3 4-(4-(Hydroxymethyl)-1h-1,2,3-Triazol-1-Yl)pyridine-2, 6-Dicarboxylic acid PDB codes: 4bal(A),
		4. Ligand: I3C × 3 5-Amino-2,4,6-Triiodobenzene-1,3-Dicarboxylic acid PDB codes: 3e3s(A),
		5. Ligand: IKX × 3 4-(4-(2-Hydroxyethyl)-1h-1,2,3-Triazol-1-Yl)pyridine-2, 6-Dicarboxylic acid PDB codes: 4bar(A),
		6. Ligand: 6O0 × 2 (1-Butyl-3-Methyl-1,3-Dihydro-2h-Imidazol-2-Ylidene) (chloro)gold PDB codes: 5jvx(A),
		7. Ligand: PDC × 2 Pyridine-2,6-Dicarboxylic acid PDB codes: 2pe7(A),
_Na		8. Metal: _NA × 2 PDB codes: 4zg3(A), 5mjg(A).
		9. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2vu7(A).
		10. Ligand: SEY × 1 Selenourea PDB code: 5t3g(A).
		11. Ligand: SRT × 1 S,R meso-Tartaric acid PDB code: 2vu7(A).
		12. Ligand: XXX × 1 (1r,2r,3s,4r,6s)-4,6-Diamino-2,3-Dihydroxycyclohexyl 2, 6-Diamino-2,6-Dideoxy-Alpha-D- Glucopyranoside PDB code: 6e0d(A).

Cluster 2 contains 6 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3vhg(A), 3vjq(A).
		2. Ligand: ASC × 1 ascorbic acid Ascorbic acid PDB code: 4tvt(A).
		3. Ligand: TLA × 88 L(+)-Tartaric acid PDB codes: 1lr2(A), 1lr3(A), 1lxz(A), 1ly0(A), 1rqw(A), 1thw(A), 2a7i(X), 2blr(A), 2blu(A), 2pe7(A), 2vhk(A), 2vhr(A), 2vi3(A), 2vi4(A), 3dzn(A), 3dzp(A), 3dzr(A), 3e0a(A), 3e3s(A), 3n02(A), 3n03(A), 3qy5(A), 3wxs(A), 3x3o(A), 3x3q(A), 3x3r(A), 3x3s(A), 3x3t(A), 4axr(A), 4c3c(A), 4dc5(A), 4dc6(A), 4ek0(A), 4eka(A), 4ekb(A), 4ekh(A), 4eko(A), 4ekt(A), 4el2(A), 4el3(A), 4el7(A), 4ela(A), 4tvt(A), 4xvb(A), 4zg3(A), 4zxr(A), 5a47(A), 5fgt(A), 5fgx(A), 5jvx(A), 5kvw(A), 5kvx(A), 5kvz(A), 5kw0(A), 5kw3(A), 5kw4(A), 5kw5(A), 5kw7(A), 5kw8(A), 5lh1(A), 5lh3(A), 5lh5(A), 5lh6(A), 5lh7(A), 5lmh(A), 5ln0(A), 5t3g(A), 5tcl(A), 5wr8(A), 6c6w(A), 6coa(A), 6e0d(A), 6fj6(A), 6fj8(A), 6fj9(A), 6g89(C), 6s19(A), 6s1d(A), 6s1e(A), 6s1g(A), 6srj(A), 6srk(A), 6srl(A), 6sro(A), 6srp(A), 6srq(A), 6ybx(A), 6yc5(A).
		4. Ligand: TAR × 4 D(-)-Tartaric acid PDB codes: 1kwn(A), 2g4y(A), 2oqn(A), 2vi2(A).
		5. Ligand: SEY × 3 Selenourea PDB codes: 5t3g(A),
		6. Ligand: SRT × 1 S,R meso-Tartaric acid PDB code: 5mjg(A).

Cluster 3 contains 6 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 14 glycerin Glycerol PDB codes: 2vhk(A), 2vhr(A), 2vi2(A), 2vi3(A), 2vi4(A), 3al7(A), 3ald(A), 3v7v(A), 3v84(A), 3v87(A), 3v8a(A), 5x9l(A), 5x9m(A), 5yyp(A).
		2. Ligand: ALA × 1 PDB code: 6s1g(A).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2vu7(A).
		4. Ligand: MHA × 1 (Carbamoylmethyl-Carboxymethyl-Amino)-Acetic acid PDB code: 5sw1(A).
		5. Ligand: SEY × 1 Selenourea PDB code: 5t3g(A).
_Na		6. Metal: _NA × 1 PDB code: 4zg3(A).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ASC × 1 ascorbic acid Ascorbic acid PDB code: 4tvt(A).
		2. Ligand: TLA × 14 L(+)-Tartaric acid PDB codes: 2pe7(A), 2vhk(A), 3al7(A), 3ald(A), 3n02(A), 3n03(A), 4dc5(A), 4dc6(A), 4zg3(A), 5jvx(A), 5x9l(A), 5x9m(A), 5yyq(A), 5yyr(A).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2vu6(A).
		2. Ligand: SEY × 2 Selenourea PDB codes: 5t3g(A),
		3. Ligand: 6O0 × 1 (1-Butyl-3-Methyl-1,3-Dihydro-2h-Imidazol-2-Ylidene) (chloro)gold PDB code: 5jvx(A).

Cluster 6 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
__K		1. Metal: __K × 1 PDB code: 3e3s(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 5sw0(A).
		3. Ligand: SEY × 1 Selenourea PDB code: 5t3g(A).
		4. Ligand: SRT × 1 S,R meso-Tartaric acid PDB code: 2vu7(A).