spacer
spacer

PDBsum entry 5tcl

Go to PDB code: 
protein ligands links
Plant protein PDB id
5tcl

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chain
207 a.a.
Ligands
TLA
GOL
PDB id:
5tcl
Name: Plant protein
Title: Thaumatin from 4.96 a wavelength data collection
Structure: Thaumatin-1. Chain: a. Synonym: thaumatin i
Source: Thaumatococcus daniellii. Katemfe. Organism_taxid: 4621
Resolution:
3.20Å     R-factor:   0.203     R-free:   0.246
Authors: O.Aurelius,R.Duman,K.El Omari,V.Mykhaylyk,A.Wagner
Key ref: O.Aurelius et al. (2017). Long-wavelength macromolecular crystallography - First successful native SAD experiment close to the sulfur edge. Nucl Instrum Methods Phys Res B, 411, 12-16. PubMed id: 29276323
Date:
15-Sep-16     Release date:   20-Sep-17    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P02883  (THM1_THADA) -  Thaumatin I from Thaumatococcus daniellii
Seq:
Struc:
235 a.a.
207 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 

 
Nucl Instrum Methods Phys Res B 411:12-16 (2017)
PubMed id: 29276323  
 
 
Long-wavelength macromolecular crystallography - First successful native SAD experiment close to the sulfur edge.
O.Aurelius, R.Duman, K.El Omari, V.Mykhaylyk, A.Wagner.
 
  ABSTRACT  
 
Phasing of novel macromolecular crystal structures has been challenging since the start of structural biology. Making use of anomalous diffraction of natively present elements, such as sulfur and phosphorus, for phasing has been possible for some systems, but hindered by the necessity to access longer X-ray wavelengths in order to make most use of the anomalous scattering contributions of these elements. Presented here are the results from a first successful experimental phasing study of a macromolecular crystal structure at a wavelength close to the sulfur K edge. This has been made possible by the in-vacuum setup and the long-wavelength optimised experimental setup at the I23 beamline at Diamond Light Source. In these early commissioning experiments only standard data collection and processing procedures have been applied, in particular no dedicated absorption correction has been used. Nevertheless the success of the experiment demonstrates that the capability to extract phase information can be even further improved once data collection protocols and data processing have been optimised.
 

 

spacer

spacer