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Ligand clusters for UniProt code P00639

Ligand clusters for P00639: Deoxyribonuclease-1 OS=Bos taurus GN=DNASE1 PE=1 SV=3

Top 6 (of 10) ligand clusters
Cluster 1.
6 ligand types
11 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2a3zB  
JSmol
 

Structures

PDB   Schematic diagram
2a3zB    
2d1kB    
3w3dB    
2dnjA    
1atnD    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG × 5
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1dnk(A), 2a3z(B), 2a40(B), 2a42(B), 3cjc(D).


 
2. Ligand: NAG-NAG-BMA × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 2a41(B), 2d1k(B).


 
3. Ligand: NAG-NAG-BMA-MAN-BMA-BMA-GLA × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose, GLA=Alpha d-Galactose.
PDB code: 3dni(A).


 
4. Ligand: NAG-NAG-BMA-MAN-BMA-BMA-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 3w3d(B).


 
5. Ligand: NDG-NAG-BMA × 1
NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB code: 1atn(D).


 
6. Ligand: NGA × 1
N-Acetyl-D-Galactosamine
PDB code: 2dnj(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
Glycerol
PDB codes: 2a3z(B), 2a40(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 2a40(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3cjc(D).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3cjc(D).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3cjc(D).

 

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