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Ligand clusters for UniProt code P00639
Ligand clusters for P00639: Deoxyribonuclease-1 OS=Bos taurus GN=DNASE1 PE=1 SV=3
Top 6 (of 10) ligand clusters
Cluster 1.
6 ligand types
11 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2a3zB
Structures
PDB
Schematic diagram
2a3z
B
2d1k
B
3w3d
B
2dnj
A
1atn
D
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
NAG-NAG × 5
NAG
=N-Acetyl-D-Glucosamine.
PDB codes:
1dnk
(A),
2a3z
(B),
2a40
(B),
2a42
(B),
3cjc
(D).
2. Ligand:
NAG-NAG-BMA × 2
NAG
=N-Acetyl-D-Glucosamine,
BMA
=Beta-D-Mannose.
PDB codes:
2a41
(B),
2d1k
(B).
3. Ligand:
NAG-NAG-BMA-MAN-BMA-BMA-GLA × 1
NAG
=N-Acetyl-D-Glucosamine,
BMA
=Beta-D-Mannose,
MAN
=Alpha-D-Mannose,
GLA
=Alpha d-Galactose.
PDB code:
3dni
(A).
4. Ligand:
NAG-NAG-BMA-MAN-BMA-BMA-MAN × 1
NAG
=N-Acetyl-D-Glucosamine,
BMA
=Beta-D-Mannose,
MAN
=Alpha-D-Mannose.
PDB code:
3w3d
(B).
5. Ligand:
NDG-NAG-BMA × 1
NDG
=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose,
NAG
=N-Acetyl-D-Glucosamine,
BMA
=Beta-D-Mannose.
PDB code:
1atn
(D).
6. Ligand:
NGA × 1
N-Acetyl-D-Galactosamine
PDB code:
2dnj
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
2a3z
(B),
2a40
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
Glycerol
PDB code:
2a40
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3cjc
(D).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3cjc
(D).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3cjc
(D).