Ligand clusters for UniProt code P00592

Ligand clusters for P00592: Phospholipase A2, major isoenzyme OS=Sus scrofa OX=9823 GN=PLA2G1B PE=1 SV=1

		Top 6 (of 10) ligand clusters Cluster 1. 21 ligand types 69 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 20 ligands Cluster 6. 2 ligand types 4 ligands
Representative protein: 1y6oA

Structures

PDB		Schematic diagram
1y6oA
1fxfA
3fviA
1sfvA
1fx9A
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Cluster 1 contains 21 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: BER × 1 berberine Berberine PDB code: 4dbk(A).
		2. Ligand: CHD × 1 cholic acid Cholic acid PDB code: 2azy(A).
		3. Ligand: PLM × 1 palmitic acid Palmitic acid PDB code: 3qlm(A).
		4. Ligand: TCH × 1 taurocholic acid Taurocholic acid PDB code: 2azz(A).
		5. Ligand: ACT × 1 Acetate ion PDB code: 1l8s(A).
		6. Ligand: LPE × 1 1-O-Octadecyl-Sn-Glycero-3-Phosphocholine PDB code: 1l8s(A).
		7. Ligand: DHG × 1 Phosphonic acid 2-Dodecanoylamino-Hexyl ester propyl ester PDB code: 5p2p(A).
		8. Ligand: PO4 × 10 Phosphate ion PDB codes: 1fxf(A), 1l8s(A), 1y6o(A),
		9. Ligand: MJI × 5 1-Hexadecyl-3-Trifluoroethyl-Sn-Glycero-2-Phosphate methane PDB codes: 1fx9(A), 1fxf(A), 1hn4(A), 1y6o(A),
		10. Ligand: CHO × 1 Glycochenodeoxycholic acid PDB code: 2b04(A).
		11. Ligand: TUD × 2 Taurochenodeoxycholic acid PDB codes: 2b01(A), 2b03(A).
		12. Ligand: GCH × 1 Glycocholic acid PDB code: 2b00(A).
		13. Ligand: SO4 × 6 Sulfate ion PDB codes: 1fx9(A), 1hn4(A),
_Ca		14. Metal: _CA × 26 PDB codes: 1fx9(A), 1fxf(A), 1hn4(A), 1l8s(A), 1p2p(A), 1pir(A), 1sfv(A), 1y6o(A), 1y6p(A), 2azz(A), 2b00(A), 2b01(A), 2b04(A), 2phi(A), 3fvi(A), 3fvj(A), 3hsw(A), 3l30(A), 3o4m(A), 3p2p(A), 3qlm(A), 4dbk(A), 4g5i(A), 4o1y(A), 4p2p(A), 5p2p(A).
		15. Ligand: OSF × 3 Octyl sulfate PDB codes: 3fvi(A),
_Cl		16. Metal: _CL × 3 PDB codes: 2azz(A), 2b01(A), 3fvi(A).
		17. Ligand: CAQ × 1 Catechol PDB code: 3o4m(A).
		18. Ligand: DB7 × 1 Dibutyl benzene-1,2-Dicarboxylate PDB code: 4g5i(A).
		19. Ligand: DBW × 1 4,14-Dihydro-8h-[1,3]dioxolo[4,5-G]isoquino[3,2- A]isoquinoline-9,10-Diol PDB code: 3l30(A).
		20. Ligand: MCW × 1 2-Methoxycyclohexa-2,5-Diene-1,4-Dione PDB code: 3hsw(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 3 Phosphate ion PDB codes: 1fxf(A), 1l8s(A), 1y6o(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 1fx9(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1hn4(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 1y6o(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
_Ca		1. Metal: _CA × 19 PDB codes: 1p2p(A), 1y6p(A), 2azy(A), 2azz(A), 2b00(A), 2b01(A), 2b03(A), 2b04(A), 2phi(A), 3fvj(A), 3hsw(A), 3o4m(A), 3p2p(A), 3qlm(A), 4dbk(A), 4g5i(A), 4o1y(A), 4p2p(A), 5p2p(A).
_Cl		2. Metal: _CL × 1 PDB code: 3l30(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
_Ca		1. Metal: _CA × 3 PDB codes: 2azz(A), 2b01(A), 2b04(A).
_Cl		2. Metal: _CL × 1 PDB code: 2b04(A).