Ligand clusters for UniProt code P00282

Ligand clusters for P00282: Azurin OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=azu PE=1 SV=2

		Top 6 (of 13) ligand clusters Cluster 1. 14 ligand types 22 ligands Cluster 2. 11 ligand types 31 ligands Cluster 3. 2 ligand types 4 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 3 ligand types 4 ligands Cluster 6. 8 ligand types 100 ligands
Representative protein: 5yt7A

Structures

PDB		Schematic diagram
5yt7A
3fq1A
1azrA
4ko5A
2ftaA
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: TRS × 3 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 3u25(A), 4mfh(A), 4wkx(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5i28(A).
_Cu		3. Metal: _CU × 4 PDB codes: 3n2j(A), 4mfh(A), 4wkx(A), 5syd(A).
_Ca		4. Metal: _CA × 3 PDB codes: 5yt7(A), 6gyi(A), 6iav(A).
		5. Ligand: RTB × 2 (2,2':6',2'-Terpyridine)-(1,10-Phenanthroline) ruthenium (ii) PDB codes: 1jzf(A), 1jzg(A).
		6. Ligand: DOS × 1 Delta-Bis(2,2'-Bipyridine)imidazole osmium (ii) PDB code: 1jzj(A).
		7. Ligand: DRU × 1 Delta-Bis(2,2'-Bipyridine)imidazole ruthenium (ii) PDB code: 1jze(A).
		8. Ligand: LOS × 1 Lambda-Bis(2,2'-Bipyridine)imidazole osmium (ii) PDB code: 1jzj(A).
		9. Ligand: LRU × 1 Lambda-Bis(2,2'-Bipyridine)imidazole ruthenium (ii) PDB code: 1jze(A).
		10. Ligand: NO3 × 1 Nitrate ion PDB code: 5yt7(A).
		11. Ligand: RBU × 1 Ruthemium bis(2,2'-Bipyridine)-2-Imidazole PDB code: 1bex(A).
		12. Ligand: REP × 1 (1,10 phenanthroline)-(Tri-Carbon monoxide) rhenium (i) PDB code: 1jzi(A).
		13. Ligand: RTA × 1 (2,2':6',2''-Terpyridine)-(2,2''-Bipyridine) ruthenium (ii) PDB code: 1jzh(A).
		14. Ligand: SO4 × 1 Sulfate ion PDB code: 4qlw(A).

Cluster 2 contains 11 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4bww(A),
		2. Ligand: REQ × 9 (1,10 phenanthroline)-(Tri-Carbon monoxide) rhenium (i) PDB codes: 2i7o(A), 4k9j(A), 6mjr(A), 6mjs(A), 6mjt(A).
		3. Ligand: REP × 6 (1,10 phenanthroline)-(Tri-Carbon monoxide) rhenium (i) PDB codes: 1r1c(A), 2fnw(A), 2i7s(A), 3ibo(A).
		4. Ligand: NO3 × 5 Nitrate ion PDB codes: 4bww(A), 4jkn(A), 5yt7(A).
		5. Ligand: ACT × 3 Acetate ion PDB codes: 4hz1(A),
		6. Ligand: 2PE × 1 Nonaethylene glycol PDB code: 2fta(A).
		7. Ligand: DRU × 1 Delta-Bis(2,2'-Bipyridine)imidazole ruthenium (ii) PDB code: 4hhg(A).
		8. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 2fta(A).
		9. Ligand: RTC-DPT × 1 RTC=Rhenium (i) tricarbonyl, DPT=4,7-Dimethyl-[1,10]phenanthroline. PDB code: 1i53(A).
_Ca		10. Metal: _CA × 1 PDB code: 6iav(A).
_Hg		11. Metal: _HG × 1 PDB code: 4jkn(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: IME × 3 Tetra(imidazole)diaquacopper (ii) PDB codes: 1jzf(A), 1jzi(A), 1jzj(A).
		2. Ligand: IMF × 1 Tetra(imidazole)diaquacopper (i) PDB code: 1jzg(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: RBU × 1 Ruthemium bis(2,2'-Bipyridine)-2-Imidazole PDB code: 1bex(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4bww(A).
		2. Ligand: OPP × 2 1-[Pyrrol-1-Yl-2,5-Dione-Methoxymethyl]-Pyrrole-2,5- Dione PDB codes: 1jvl(A), 2idf(A).
_Cu		3. Metal: _CU × 1 PDB code: 5syd(A).

Cluster 6 contains 8 ligand types

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Ligand		Description
_Cu		1. Metal: _CU × 78 PDB codes: 1ag0(A), 1azn(A), 1azr(A), 1azu(A), 1bex(A), 1cc3(A), 1e5y(A), 1e5z(A), 1etj(A), 1ezl(A), 1gr7(A), 1i53(A), 1ils(A), 1ilu(A), 1jvl(A), 1jvo(A), 1jze(A), 1jzf(A), 1jzh(A), 1jzi(A), 1jzj(A), 1xb3(A), 1xb6(A), 2azu(A), 2fnw(A), 2ft6(A), 2fta(A), 2ghz(A), 2hx7(A), 2i7o(A), 2i7s(A), 2idf(A), 2oj1(A), 2tsa(A), 2tsb(A), 3azu(A), 3fpy(A), 3fq1(A), 3fq2(A), 3fqy(A), 3fs9(A), 3fsw(A), 3fsz(A), 3ibo(A), 3in0(A), 3in2(A), 3jt2(A), 3jtb(A), 3n2j(A), 3np3(A), 3np4(A), 3oqr(A), 3u25(A), 4azu(A), 4bww(A), 4hhg(A), 4hhw(A), 4hip(A), 4k9j(A), 4ko5(A), 4ko6(A), 4ko7(A), 4ko9(A), 4kob(A), 4koc(A), 4mfh(A), 4qkt(A), 4wkx(A), 5azu(A), 5i26(A), 5i28(A), 5syd(A), 5yt7(A), 6gyi(A), 6mjr(A), 6mjs(A), 6mjt(A).
Cu1		2. Metal: CU1 × 13 PDB codes: 1jzg(A), 1r1c(A), 2ft7(A), 2ft8(A), 2gi0(A), 2hx8(A), 2hx9(A), 2hxa(A), 2xv0(A), 2xv2(A), 2xv3(A), 3fsa(A), 3ft0(A).
_Zn		3. Metal: _ZN × 3 PDB codes: 1e67(A), 1xb8(A), 2iwe(A).
_Co		4. Metal: _CO × 2 PDB codes: 1vlx(A), 6iav(A).
		5. Ligand: 2IH × 1 1,1'-Hexane-1,6-Diylbis(1h-Imidazole) PDB code: 2iwe(A).
_Ag		6. Metal: _AG × 1 PDB code: 3uge(A).
_Hg		7. Metal: _HG × 1 PDB code: 4jkn(A).
_Ni		8. Metal: _NI × 1 PDB code: 1nzr(A).