Paradigms of convergent evolution in enzymes.

Riziotis IG, Kafas JC, Ong G, Borkakoti N, Ribeiro AJM, Thornton JM.

The FEBS journal, 2024

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PDBe-KB: a community-driven resource for structural and functional annotations.

PDBe-KB consortium.

Nucleic acids research, 2020

doi:10.1093/nar/gkz853.

A global analysis of function and conservation of catalytic residues in enzymes.

Ribeiro AJM, Tyzack JD, Borkakoti N, Holliday GL, Thornton JM.

The Journal of biological chemistry, 2019

doi:10.1074/jbc.rev119.006289.

Identifying pseudoenzymes using functional annotation: pitfalls of common practice.

Ribeiro AJM, Tyzack JD, Borkakoti N, Thornton JM.

The FEBS journal, 2019

doi:10.1111/febs.15142.

Exploring Chemical Biosynthetic Design Space with Transform-MinER.

Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM.

ACS synthetic biology, 2019

doi:10.1021/acssynbio.9b00105.

Finding enzyme cofactors in Protein Data Bank.

Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S.

Bioinformatics (Oxford, England), 2019

doi:10.1093/bioinformatics/btz115.

Transform-MinER: transforming molecules in enzyme reactions.

Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM.

Bioinformatics (Oxford, England), 2018

doi:10.1093/bioinformatics/bty394.

Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates.

Tyzack JD, Fernando L, Ribeiro AJM, Borkakoti N, Thornton JM.

Structure (London, England : 1993), 2018

doi:10.1016/j.str.2018.02.009.

Ribonuclease A. Analysis of the hydrogen bond geometry, and spatial accessibility at the active site.

Harris GW, Borkakoti N, Moss DS, Palmer RA, Howlin B.

Biochimica et biophysica acta, 1987

doi:10.1016/0167-4838(87)90039-2.

Solvent-induced distortions and the curvature of alpha-helices.

Blundell T, Barlow D, Borkakoti N, Thornton J.

Nature, 1983

doi:10.1038/306281a0.

Specificity of pancreatic ribonuclease-A. An X-ray study of a protein-nucleotide complex.

Borkakoti N, Palmer RA, Haneef I, Moss DS.

Journal of molecular biology, 1983

doi:10.1016/s0022-2836(83)80168-5.

Enzyme specificity: base recognition and hydrolysis of RNA by ribonuclease A.

Borkakoti N.

FEBS letters, 1983

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The active site of ribonuclease A from the crystallographic studies of ribonuclease-A-inhibitor complexes.

Borkakoti N.

European journal of biochemistry, 1983

doi:10.1111/j.1432-1033.1983.tb07329.x.