Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping.
Quan TP, Bawa Z, Foster D, Walker T, Del Ojo Elias C, Rathod P, MMM Informatics Group, Iqbal Z, Bradley P, Mowbray J, Walker AS, Crook DW, Wyllie DH, Peto TEA, Smith EG.
Journal of clinical microbiology Volume 56 (2018) p.
DOI: 10.1128/jcm.01480-17


Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes.
Dolle DD, Liu Z, Cotten M, Simpson JT, Iqbal Z, Durbin R, McCarthy SA, Keane TM.
Genome research Volume 27 (2017) p.300-309
DOI: 10.1101/gr.211748.116

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples.
Votintseva AA, Bradley P, Pankhurst L, Del Ojo Elias C, Loose M, Nilgiriwala K, Chatterjee A, Smith EG, Sanderson N, Walker TM, Morgan MR, Wyllie DH, Walker AS, Peto TEA, Crook DW, Iqbal Z.
Journal of clinical microbiology Volume 55 (2017) p.1285-1298
DOI: 10.1128/jcm.02483-16

Unknown year

Integrating long-range connectivity information into de Bruijn graphs
Turner I, Garimella KV, Iqbal Z, McVean G.
Volume (0) p.
DOI: 10.1101/147777

Inferring synteny between genome assemblies: a systematic evaluation
Liu D, Hunt M, Tsai IJ.
Volume (0) p.
DOI: 10.1101/149989