PDBsum entry 5m8h

Transferase

PDB id: 5m8h

Contents

Protein chains

377 a.a.

208 a.a.

Ligands

MPD ×12

Metals

_CL ×15

_SR ×10

Waters ×629

PDB id:

5m8h

Name:

Transferase

Title:

Atp phosphoribosyltransferase (hiszg atpprt) from psychrobacter arcticus

Structure:

Atp phosphoribosyltransferase regulatory subunit. Chain: a, b, c, d. Engineered: yes. Other_details: some residues missing from model due to flexibility/poor electron density. Atp phosphoribosyltransferase. Chain: e, f, g, h. Synonym: atp-prtase. Engineered: yes.

Source:

Psychrobacter arcticus (strain dsm 17307 / 273- 4). Organism_taxid: 259536. Gene: hisz, psyc_0676. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Gene: hisg, psyc_1903. Expression_system_variant: c43.

Resolution:

2.34Å R-factor: 0.230 R-free: 0.269

Authors:

M.S.Alphey,Y.Ge,J.H.Naismith,R.G.Da Silva

Key ref:

R.Stroek et al. (2017). Kinetics and Structure of a Cold-Adapted Hetero-Octameric ATP Phosphoribosyltransferase. Biochemistry, 56, 793-803. PubMed id: 28092443 DOI: 10.1021/acs.biochem.6b01138

Date:

28-Oct-16 Release date: 06-Sep-17

Protein chains

Q4FTX3  (HISZ_PSYA2) -  ATP phosphoribosyltransferase regulatory subunit from Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)

Seq: 387 a.a.

Struc: 377 a.a.

Protein chains

Q4FQF7  (HIS1_PSYA2) -  ATP phosphoribosyltransferase from Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)

Seq: 231 a.a.

Struc: 208 a.a.

Enzyme reactions

• Enzyme class 2: Chains A, B, C, D: E.C.?
• Enzyme class 3: Chains E, F, G, H: E.C.2.4.2.17 - Atp phosphoribosyltransferase.

Pathway:

• Reaction: 1-(5-phospho-beta-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP

Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

reference

DOI no: 10.1021/acs.biochem.6b01138

Biochemistry 56:793-803 (2017)

PubMed id: 28092443

Kinetics and Structure of a Cold-Adapted Hetero-Octameric ATP Phosphoribosyltransferase.

R.Stroek, Y.Ge, P.D.Talbot, M.K.Glok, K.E.Bernaś, C.M.Thomson, E.R.Gould, M.S.Alphey, H.Liu, G.J.Florence, J.H.Naismith, R.G.da Silva.

ABSTRACT

Adenosine 5'-triphosphate phosphoribosyltransferase (ATPPRT) catalyzes the first step in histidine biosynthesis, the condensation of ATP and 5-phospho-α-d-ribosyl-1-pyrophosphate to generate N¹-(5-phospho-β-d-ribosyl)-ATP and inorganic pyrophosphate. The enzyme is allosterically inhibited by histidine. Two forms of ATPPRT, encoded by the hisG gene, exist in nature, depending on the species. The long form, HisG_L, is a single polypeptide chain with catalytic and regulatory domains. The short form, HisG_S, lacks a regulatory domain and cannot bind histidine. HisG_Sinstead is found in complex with a regulatory protein, HisZ, constituting the ATPPRT holoenzyme. HisZ triggers HisG_Scatalytic activity while rendering it sensitive to allosteric inhibition by histidine. Until recently, HisG_Swas thought to be catalytically inactive without HisZ. Here, recombinant HisG_Sand HisZ from the psychrophilic bacterium Psychrobacter arcticus were independently overexpressed and purified. The crystal structure of P. arcticus ATPPRT was determined at 2.34 Å resolution, revealing an equimolar HisG_S-HisZ hetero-octamer. Steady-state kinetics indicate that both the ATPPRT holoenzyme and HisG_Sare catalytically active. Surprisingly, HisZ confers only a modest 2-4-fold increase in k_cat. Reaction profiles for both enzymes cannot be distinguished by³¹P nuclear magnetic resonance, indicating that the same reaction is catalyzed. The temperature dependence of k_catshows deviation from Arrhenius behavior at 308 K with the holoenzyme. Interestingly, such deviation is detected only at 313 K with HisG_S. Thermal denaturation by CD spectroscopy resulted in T_m's of 312 and 316 K for HisZ and HisG_S, respectively, suggesting that HisZ renders the ATPPRT complex more thermolabile. This is the first characterization of a psychrophilic ATPPRT.