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PDBsum entry 5m8h
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Pore analysis for: 5m8h calculated with  MOLE 2.0
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PDB id
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5m8h
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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16 pores,
coloured by radius |
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22 pores,
coloured by radius
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22 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.62 |
1.93 |
41.2 |
-0.63 |
-0.53 |
9.2 |
84 |
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1 |
4 |
1 |
4 |
1 |
1 |
0 |
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2 |
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2.04 |
3.98 |
41.4 |
-0.39 |
0.08 |
12.7 |
86 |
4 |
2 |
6 |
5 |
2 |
0 |
0 |
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3 |
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1.77 |
2.52 |
49.1 |
-0.95 |
-0.01 |
21.1 |
76 |
8 |
5 |
1 |
4 |
3 |
1 |
0 |
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4 |
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2.16 |
2.19 |
54.5 |
-2.15 |
-0.63 |
25.0 |
89 |
7 |
5 |
8 |
2 |
1 |
1 |
0 |
MPD 407 A MPD 302 G
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5 |
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1.93 |
2.73 |
57.0 |
-1.62 |
-0.41 |
24.1 |
86 |
4 |
6 |
4 |
5 |
1 |
0 |
0 |
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6 |
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2.86 |
4.20 |
57.9 |
-1.43 |
-0.33 |
21.8 |
83 |
7 |
2 |
5 |
6 |
2 |
1 |
0 |
MPD 405 D MPD 304 E
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7 |
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1.95 |
2.36 |
60.8 |
-1.24 |
-0.13 |
16.5 |
86 |
6 |
4 |
6 |
7 |
3 |
0 |
0 |
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8 |
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1.77 |
2.60 |
64.6 |
-1.93 |
-0.27 |
22.4 |
79 |
11 |
4 |
5 |
6 |
2 |
0 |
0 |
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9 |
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1.72 |
1.84 |
71.4 |
-1.74 |
-0.32 |
21.8 |
83 |
7 |
6 |
4 |
6 |
2 |
0 |
0 |
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10 |
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1.97 |
2.41 |
72.2 |
-1.05 |
-0.18 |
20.8 |
82 |
9 |
6 |
6 |
7 |
4 |
1 |
0 |
MPD 405 D MPD 304 E
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11 |
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3.22 |
4.86 |
73.4 |
-1.92 |
-0.39 |
27.8 |
81 |
11 |
7 |
4 |
6 |
1 |
0 |
0 |
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12 |
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2.89 |
4.09 |
73.5 |
-2.81 |
-0.64 |
34.2 |
84 |
10 |
8 |
6 |
4 |
1 |
1 |
0 |
MPD 405 D MPD 304 E
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13 |
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1.76 |
3.71 |
76.0 |
-1.22 |
-0.57 |
16.3 |
92 |
8 |
4 |
10 |
7 |
1 |
0 |
0 |
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14 |
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2.07 |
2.06 |
87.7 |
-1.55 |
-0.26 |
26.1 |
81 |
13 |
11 |
5 |
7 |
3 |
0 |
0 |
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15 |
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1.76 |
2.57 |
91.6 |
-2.24 |
-0.33 |
24.1 |
80 |
11 |
6 |
5 |
6 |
3 |
0 |
0 |
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16 |
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1.64 |
1.64 |
96.5 |
-0.49 |
-0.22 |
10.8 |
86 |
3 |
5 |
7 |
9 |
3 |
1 |
0 |
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17 |
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1.78 |
2.67 |
99.2 |
-1.98 |
-0.42 |
25.7 |
81 |
13 |
5 |
4 |
10 |
2 |
0 |
0 |
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18 |
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2.30 |
2.34 |
105.2 |
-2.23 |
-0.51 |
26.6 |
85 |
9 |
10 |
7 |
6 |
3 |
1 |
0 |
MPD 406 B MPD 407 B
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19 |
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2.73 |
2.76 |
106.3 |
-2.17 |
-0.45 |
26.7 |
81 |
9 |
8 |
7 |
9 |
1 |
0 |
0 |
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20 |
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2.62 |
3.28 |
113.4 |
-2.38 |
-0.52 |
32.5 |
83 |
10 |
8 |
2 |
9 |
1 |
0 |
0 |
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21 |
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2.29 |
2.33 |
115.9 |
-2.23 |
-0.60 |
27.5 |
84 |
11 |
9 |
6 |
12 |
1 |
1 |
0 |
MPD 406 B MPD 407 B
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22 |
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2.09 |
2.10 |
127.1 |
-1.20 |
-0.37 |
20.4 |
84 |
7 |
8 |
6 |
9 |
3 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program