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PDBsum entry 1gss
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Transferase/transferase inhibitor
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PDB id
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1gss
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* Residue conservation analysis
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Enzyme class:
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E.C.2.5.1.18
- glutathione transferase.
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Reaction:
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RX + glutathione = an S-substituted glutathione + a halide anion + H+
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RX
Bound ligand (Het Group name = )
matches with 76.92% similarity
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+
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glutathione
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=
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S-substituted glutathione
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+
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halide anion
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+
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H(+)
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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DOI no:
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J Mol Biol
227:214-226
(1992)
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PubMed id:
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Three-dimensional structure of class pi glutathione S-transferase from human placenta in complex with S-hexylglutathione at 2.8 A resolution.
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P.Reinemer,
H.W.Dirr,
R.Ladenstein,
R.Huber,
M.Lo Bello,
G.Federici,
M.W.Parker.
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ABSTRACT
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The three-dimensional structure of human class pi glutathione S-transferase from
placenta (hGSTP1-1), a homodimeric enzyme, has been solved by Patterson search
methods and refined at 2.8 A resolution to a final crystallographic R-factor of
19.6% (8.0 to 2.8 A resolution). Subunit folding topology, subunit overall
structure and subunit association closely resembles the structure of porcine
class pi glutathione S-transferase. The binding site of a competitive inhibitor,
S-hexylglutathione, is analyzed and the locations of the binding regions for
glutathione (G-site) and electrophilic substrates (H-site) are determined. The
specific interactions between protein and the inhibitor's glutathione peptide
are the same as those observed between glutathione sulfonate and the porcine
isozyme. The H-site is located adjacent to the G-site, with the hexyl moiety
lying above a segment (residues 8 to 10) connecting strand beta 1 and helix
alpha A where it is in hydrophobic contact with Tyr7, Phe8, Val10, Val35 and
Tyr106. Catalytic models are discussed on the basis of the molecular structure.
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Selected figure(s)
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Figure 8.
Figure 8. Conolly dot surface of the op region of human class x glutathione S-transferase showing both active sites
occupied by S-hexyllutathione. View is along the local dyad. Also shown is the cavity formed between the 2 subunits.
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Figure 9.
Figure 9. Model o inhibitor S-hexylglutathione and its next neighbors at the active site of human
-transferase.
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The above figures are
reprinted
by permission from Elsevier:
J Mol Biol
(1992,
227,
214-226)
copyright 1992.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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A.J.Ketterman,
C.Saisawang,
and
J.Wongsantichon
(2011).
Insect glutathione transferases.
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Drug Metab Rev,
43,
253-265.
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A.Oakley
(2011).
Glutathione transferases: a structural perspective.
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Drug Metab Rev,
43,
138-151.
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I.Quesada-Soriano,
L.J.Parker,
A.Primavera,
J.Wielens,
J.K.Holien,
J.M.Casas-Solvas,
A.Vargas-Berenguel,
A.M.Aguilera,
M.Nuccetelli,
A.P.Mazzetti,
M.L.Bello,
M.W.Parker,
and
L.García-Fuentes
(2011).
Diuretic drug binding to human glutathione transferase P1-1: potential role of Cys-101 revealed in the double mutant C47S/Y108V.
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J Mol Recognit,
24,
220-234.
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PDB codes:
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K.D.Tew,
and
D.M.Townsend
(2011).
Regulatory functions of glutathione S-transferase P1-1 unrelated to detoxification.
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Drug Metab Rev,
43,
179-193.
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I.Quesada-Soriano,
L.J.Parker,
A.Primavera,
J.M.Casas-Solvas,
A.Vargas-Berenguel,
C.Barón,
C.J.Morton,
A.Paola Mazzetti,
M.Lo Bello,
M.W.Parker,
and
L.García-Fuentes
(2009).
Influence of the H-site residue 108 on human glutathione transferase P1-1 ligand binding: Structure-thermodynamic relationships and thermal stability.
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Protein Sci,
18,
2454-2470.
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PDB codes:
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L.M.Balogh,
A.G.Roberts,
L.M.Shireman,
R.J.Greene,
and
W.M.Atkins
(2008).
The stereochemical course of 4-hydroxy-2-nonenal metabolism by glutathione S-transferases.
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J Biol Chem,
283,
16702-16710.
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Y.C.Huang,
S.Misquitta,
S.Y.Blond,
E.Adams,
and
R.F.Colman
(2008).
Catalytically Active Monomer of Glutathione S-Transferase {pi} and Key Residues Involved in the Electrostatic Interaction between Subunits.
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J Biol Chem,
283,
32880-32888.
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B.Blanchette,
X.Feng,
and
B.R.Singh
(2007).
Marine glutathione S-transferases.
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Mar Biotechnol (NY),
9,
513-542.
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Y.Wu,
J.Shen,
and
Z.Yin
(2007).
Expression, purification and functional analysis of hexahistidine-tagged human glutathione S-transferase P1-1 and its cysteinyl mutants.
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Protein J,
26,
359-370.
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C.Lu,
M.R.Spitz,
H.Zhao,
Q.Dong,
M.Truong,
J.Y.Chang,
G.R.Blumenschein,
W.K.Hong,
and
X.Wu
(2006).
Association between glutathione S-transferase pi polymorphisms and survival in patients with advanced nonsmall cell lung carcinoma.
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Cancer,
106,
441-447.
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R.Téllez-Sanz,
E.Cesareo,
M.Nuccetelli,
A.M.Aguilera,
C.Barón,
L.J.Parker,
J.J.Adams,
C.J.Morton,
M.Lo Bello,
M.W.Parker,
and
L.García-Fuentes
(2006).
Calorimetric and structural studies of the nitric oxide carrier S-nitrosoglutathione bound to human glutathione transferase P1-1.
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Protein Sci,
15,
1093-1105.
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PDB codes:
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W.Q.Liao,
X.F.Liang,
L.Wang,
L.M.Lei,
and
B.P.Han
(2006).
Molecular cloning and characterization of alpha-class glutathione S-transferase gene from the liver of silver carp, bighead carp, and other major Chinese freshwater fishes.
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J Biochem Mol Toxicol,
20,
114-126.
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J.M.Allan,
and
C.S.Rabkin
(2005).
Genetic susceptibility to iatrogenic malignancy.
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Pharmacogenomics,
6,
615-628.
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K.D.Tew
(2005).
TLK-286: a novel glutathione S-transferase-activated prodrug.
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Expert Opin Investig Drugs,
14,
1047-1054.
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M.Perbandt,
J.Höppner,
C.Betzel,
R.D.Walter,
and
E.Liebau
(2005).
Structure of the major cytosolic glutathione S-transferase from the parasitic nematode Onchocerca volvulus.
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J Biol Chem,
280,
12630-12636.
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PDB codes:
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M.Perbandt,
C.Burmeister,
R.D.Walter,
C.Betzel,
and
E.Liebau
(2004).
Native and inhibited structure of a Mu class-related glutathione S-transferase from Plasmodium falciparum.
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J Biol Chem,
279,
1336-1342.
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PDB codes:
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U.M.Hegazy,
B.Mannervik,
and
G.Stenberg
(2004).
Functional role of the lock and key motif at the subunit interface of glutathione transferase p1-1.
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J Biol Chem,
279,
9586-9596.
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E.Ortiz-Salmerón,
M.Nuccetelli,
A.J.Oakley,
M.W.Parker,
M.Lo Bello,
and
L.García-Fuentes
(2003).
Thermodynamic description of the effect of the mutation Y49F on human glutathione transferase P1-1 in binding with glutathione and the inhibitor S-hexylglutathione.
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J Biol Chem,
278,
46938-46948.
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PDB code:
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M.G.Jeppesen,
P.Ortiz,
W.Shepard,
T.G.Kinzy,
J.Nyborg,
and
G.R.Andersen
(2003).
The crystal structure of the glutathione S-transferase-like domain of elongation factor 1Bgamma from Saccharomyces cerevisiae.
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J Biol Chem,
278,
47190-47198.
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PDB code:
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T.Bucciarelli,
P.Sacchetta,
F.Amicarelli,
R.Petruzzelli,
S.Melino,
D.Rotilio,
N.Celli,
and
C.Di Ilio
(2002).
Amino acid sequence of the major form of toad liver glutathione transferase.
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Int J Biochem Cell Biol,
34,
1286-1290.
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A.J.Oakley,
T.Harnnoi,
R.Udomsinprasert,
K.Jirajaroenrat,
A.J.Ketterman,
and
M.C.Wilce
(2001).
The crystal structures of glutathione S-transferases isozymes 1-3 and 1-4 from Anopheles dirus species B.
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Protein Sci,
10,
2176-2185.
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PDB codes:
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G.Polekhina,
P.G.Board,
A.C.Blackburn,
and
M.W.Parker
(2001).
Crystal structure of maleylacetoacetate isomerase/glutathione transferase zeta reveals the molecular basis for its remarkable catalytic promiscuity.
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Biochemistry,
40,
1567-1576.
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PDB code:
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M.Chang,
Y.G.Shin,
R.B.van Breemen,
S.Y.Blond,
and
J.L.Bolton
(2001).
Structural and functional consequences of inactivation of human glutathione S-transferase P1-1 mediated by the catechol metabolite of equine estrogens, 4-hydroxyequilenin.
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Biochemistry,
40,
4811-4820.
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T.L.Ung,
C.Cao,
J.Lu,
K.Ozato,
and
T.E.Dever
(2001).
Heterologous dimerization domains functionally substitute for the double-stranded RNA binding domains of the kinase PKR.
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EMBO J,
20,
3728-3737.
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C.Micaloni,
A.P.Mazzetti,
M.Nuccetelli,
J.Rossjohn,
W.J.McKinstry,
G.Antonini,
A.M.Caccuri,
A.J.Oakley,
G.Federici,
G.Ricci,
M.W.Parker,
and
M.Lo Bello
(2000).
Valine 10 may act as a driver for product release from the active site of human glutathione transferase P1-1.
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Biochemistry,
39,
15961-15970.
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S.A.McCallum,
T.K.Hitchens,
C.Torborg,
and
G.S.Rule
(2000).
Ligand-induced changes in the structure and dynamics of a human class Mu glutathione S-transferase.
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Biochemistry,
39,
7343-7356.
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A.M.Caccuri,
G.Antonini,
P.Ascenzi,
M.Nicotra,
M.Nuccetelli,
A.P.Mazzetti,
G.Federici,
M.Lo Bello,
and
G.Ricci
(1999).
Temperature adaptation of glutathione S-transferase P1-1. A case for homotropic regulation of substrate binding.
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J Biol Chem,
274,
19276-19280.
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J.U.Flanagan,
J.Rossjohn,
M.W.Parker,
P.G.Board,
and
G.Chelvanayagam
(1999).
Mutagenic analysis of conserved arginine residues in and around the novel sulfate binding pocket of the human Theta class glutathione transferase T2-2.
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Protein Sci,
8,
2205-2212.
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L.Tang,
B.Guo,
A.Javed,
J.Y.Choi,
S.Hiebert,
J.B.Lian,
A.J.van Wijnen,
J.L.Stein,
G.S.Stein,
and
G.W.Zhou
(1999).
Crystal structure of the nuclear matrix targeting signal of the transcription factor acute myelogenous leukemia-1/polyoma enhancer-binding protein 2alphaB/core binding factor alpha2.
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J Biol Chem,
274,
33580-33586.
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A.J.Oakley,
M.Lo Bello,
G.Ricci,
G.Federici,
and
M.W.Parker
(1998).
Evidence for an induced-fit mechanism operating in pi class glutathione transferases.
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Biochemistry,
37,
9912-9917.
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PDB codes:
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J.Rossjohn,
W.J.McKinstry,
A.J.Oakley,
D.Verger,
J.Flanagan,
G.Chelvanayagam,
K.L.Tan,
P.G.Board,
and
M.W.Parker
(1998).
Human theta class glutathione transferase: the crystal structure reveals a sulfate-binding pocket within a buried active site.
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Structure,
6,
309-322.
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PDB codes:
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J.U.Flanagan,
J.Rossjohn,
M.W.Parker,
P.G.Board,
and
G.Chelvanayagam
(1998).
A homology model for the human theta-class glutathione transferase T1-1.
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Proteins,
33,
444-454.
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L.Stella,
A.M.Caccuri,
N.Rosato,
M.Nicotra,
M.Lo Bello,
F.De Matteis,
A.P.Mazzetti,
G.Federici,
and
G.Ricci
(1998).
Flexibility of helix 2 in the human glutathione transferase P1-1. time-resolved fluorescence spectroscopy.
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J Biol Chem,
273,
23267-23273.
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M.C.Vega,
S.B.Walsh,
T.J.Mantle,
and
M.Coll
(1998).
The three-dimensional structure of Cys-47-modified mouse liver glutathione S-transferase P1-1. Carboxymethylation dramatically decreases the affinity for glutathione and is associated with a loss of electron density in the alphaB-310B region.
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J Biol Chem,
273,
2844-2850.
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PDB codes:
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M.Nicotra,
M.Paci,
M.Sette,
A.J.Oakley,
M.W.Parker,
M.Lo Bello,
A.M.Caccuri,
G.Federici,
and
G.Ricci
(1998).
Solution structure of glutathione bound to human glutathione transferase P1-1: comparison of NMR measurements with the crystal structure.
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Biochemistry,
37,
3020-3027.
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W.J.McKinstry,
A.J.Oakley,
J.Rossjohn,
D.Verger,
K.L.Tan,
P.G.Board,
and
M.W.Parker
(1998).
Preliminary X-ray crystallographic studies of a newly defined human theta-class glutathione transferase.
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Acta Crystallogr D Biol Crystallogr,
54,
148-150.
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A.J.Oakley,
J.Rossjohn,
M.Lo Bello,
A.M.Caccuri,
G.Federici,
and
M.W.Parker
(1997).
The three-dimensional structure of the human Pi class glutathione transferase P1-1 in complex with the inhibitor ethacrynic acid and its glutathione conjugate.
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Biochemistry,
36,
576-585.
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PDB codes:
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G.Antonini,
G.Pitari,
A.M.Caccuri,
G.Ricci,
D.Boschi,
R.Fruttero,
A.Gasco,
and
P.Ascenzi
(1997).
Inhibition of human placenta glutathione transferase P1-1 by the antibiotic calvatic acid and its diazocyanide analogue--evidence for multiple catalytic intermediates.
|
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Eur J Biochem,
245,
663-667.
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G.Chelvanayagam,
M.C.Wilce,
M.W.Parker,
K.L.Tan,
and
P.G.Board
(1997).
Homology model for the human GSTT2 Theta class glutathione transferase.
|
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Proteins,
27,
118-130.
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K.D.Tew,
S.Dutta,
and
M.Schultz
(1997).
Inhibitors of glutathione S-transferases as therapeutic agents.
|
| |
Adv Drug Deliv Rev,
26,
91.
|
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L.Hu,
B.L.Borleske,
and
R.F.Colman
(1997).
Probing the active site of alpha-class rat liver glutathione S-transferases using affinity labeling by monobromobimane.
|
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Protein Sci,
6,
43-52.
|
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L.Prade,
R.Huber,
T.H.Manoharan,
W.E.Fahl,
and
W.Reuter
(1997).
Structures of class pi glutathione S-transferase from human placenta in complex with substrate, transition-state analogue and inhibitor.
|
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Structure,
5,
1287-1295.
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PDB codes:
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M.J.Snyder,
and
D.R.Maddison
(1997).
Molecular phylogeny of glutathione-S-transferases.
|
| |
DNA Cell Biol,
16,
1373-1384.
|
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|
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M.Lo Bello,
A.J.Oakley,
A.Battistoni,
A.P.Mazzetti,
M.Nuccetelli,
G.Mazzarese,
J.Rossjohn,
M.W.Parker,
and
G.Ricci
(1997).
Multifunctional role of Tyr 108 in the catalytic mechanism of human glutathione transferase P1-1. Crystallographic and kinetic studies on the Y108F mutant enzyme.
|
| |
Biochemistry,
36,
6207-6217.
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PDB code:
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R.T.Koehler,
H.O.Villar,
K.E.Bauer,
and
D.L.Higgins
(1997).
Ligand-based protein alignment and isozyme specificity of glutathione S-transferase inhibitors.
|
| |
Proteins,
28,
202-216.
|
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X.Ji,
M.Tordova,
R.O'Donnell,
J.F.Parsons,
J.B.Hayden,
G.L.Gilliland,
and
P.Zimniak
(1997).
Structure and function of the xenobiotic substrate-binding site and location of a potential non-substrate-binding site in a class pi glutathione S-transferase.
|
| |
Biochemistry,
36,
9690-9702.
|
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PDB codes:
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A.M.Caccuri,
P.Ascenzi,
G.Antonini,
M.W.Parker,
A.J.Oakley,
E.Chiessi,
M.Nuccetelli,
A.Battistoni,
A.Bellizia,
and
G.Ricci
(1996).
Structural flexibility modulates the activity of human glutathione transferase P1-1. Influence of a poor co-substrate on dynamics and kinetics of human glutathione transferase.
|
| |
J Biol Chem,
271,
16193-16198.
|
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|
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E.W.Napolitano,
H.O.Villar,
L.M.Kauvar,
D.L.Higgins,
D.Roberts,
J.Mandac,
S.K.Lee,
A.Engqvist-Goldstein,
R.Bukar,
B.L.Calio,
H.M.Jäck,
and
J.A.Tainer
(1996).
Glubodies: randomized libraries of glutathione transferase enzymes.
|
| |
Chem Biol,
3,
359-367.
|
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|
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G.Ricci,
A.M.Caccuri,
M.Lo Bello,
N.Rosato,
G.Mei,
M.Nicotra,
E.Chiessi,
A.P.Mazzetti,
and
G.Federici
(1996).
Structural flexibility modulates the activity of human glutathione transferase P1-1. Role of helix 2 flexibility in the catalytic mechanism.
|
| |
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PDB codes:
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PDB code:
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PDB code:
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|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
|
');
}
}
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