Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YPW    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.4 N Y
2 C1 N6 C N sing 1.32 N Y
3 C1 O8 C O sing 1.36 N N
4 C2 N3 C N sing 1.33 N Y
5 C2 N7 C N sing 1.39 N N
6 N3 C4 N C doub 1.32 N Y
7 C4 C5 C C sing 1.39 N Y
8 C5 N6 C N doub 1.33 N Y
9 C5 C17 C C sing 1.48 N N
10 O8 C9 O C sing 1.43 N N
11 C9 C10 C C sing 1.51 N N
12 C9 C29 C C sing 1.53 N N
13 C10 C11 C C doub 1.4 N Y
14 C10 C15 C C sing 1.38 N Y
15 C11 C12 C C sing 1.4 N Y
16 C11 C25 C C sing 1.48 N N
17 C12 C13 C C doub 1.38 N Y
18 C13 C14 C C sing 1.39 N Y
19 C14 C15 C C doub 1.39 N Y
20 C14 F16 C F sing 1.35 N N
21 C17 C18 C C doub 1.4 N Y
22 C17 C22 C C sing 1.4 N Y
23 C18 N19 C N sing 1.32 N Y
24 C18 O23 C O sing 1.36 N N
25 N19 C20 N C doub 1.32 N Y
26 C20 C21 C C sing 1.38 N Y
27 C21 C22 C C doub 1.39 N Y
28 O23 C24 O C sing 1.43 N N
29 C25 N26 C N sing 1.35 N N
30 C25 O27 C O doub 1.22 N N
31 N26 C28 N C sing 1.47 N N
32 C4 H4 C H sing 1.08 N N
33 N7 HN7 N H sing 0.97 N N
34 N7 HN7A N H sing 0.97 N N
35 C9 H9 C H sing 1.09 N N
36 C12 H12 C H sing 1.08 N N
37 C13 H13 C H sing 1.08 N N
38 C15 H15 C H sing 1.08 N N
39 C20 H20 C H sing 1.08 N N
40 C21 H21 C H sing 1.08 N N
41 C22 H22 C H sing 1.08 N N
42 C24 H24 C H sing 1.09 N N
43 C24 H24A C H sing 1.09 N N
44 C24 H24B C H sing 1.09 N N
45 N26 HN26 N H sing 0.97 N N
46 C28 H28 C H sing 1.09 N N
47 C28 H28A C H sing 1.09 N N
48 C28 H28B C H sing 1.09 N N
49 C29 H29 C H sing 1.09 N N
50 C29 H29A C H sing 1.09 N N
51 C29 H29B C H sing 1.09 N N