data_YPW
#
_chem_comp.id YPW
_chem_comp.name 2-[(1R)-1-{[3-amino-6-(2-methoxypyridin-3-yl)pyrazin-2-yl]oxy}ethyl]-4-fluoro-N-methylbenzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H20 F N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-16
_chem_comp.pdbx_modified_date 2014-05-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 397.403
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YPW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CMO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YPW C1 C1 C 0 1 Y N N N N N 29.979 44.636 9.220 0.504 -1.983 0.100 C1 YPW 1
YPW C2 C2 C 0 1 Y N N N N N 28.900 44.315 10.064 0.903 -3.296 -0.175 C2 YPW 2
YPW N3 N3 N 0 1 Y N N N N N 27.854 45.196 10.176 2.175 -3.560 -0.439 N3 YPW 3
YPW C4 C4 C 0 1 Y N N N N N 27.890 46.372 9.467 3.067 -2.585 -0.442 C4 YPW 4
YPW C5 C5 C 0 1 Y N N N N N 28.958 46.711 8.623 2.674 -1.278 -0.169 C5 YPW 5
YPW N6 N6 N 0 1 Y N N N N N 30.009 45.812 8.512 1.396 -1.008 0.096 N6 YPW 6
YPW N7 N7 N 0 1 N N N N N N 28.874 43.114 10.787 -0.035 -4.324 -0.171 N7 YPW 7
YPW O8 O8 O 0 1 N N N N N N 31.016 43.708 9.137 -0.799 -1.710 0.365 O8 YPW 8
YPW C9 C9 C 0 1 N N R N N N 32.142 43.983 8.265 -1.156 -0.335 0.517 C9 YPW 9
YPW C10 C10 C 0 1 Y N N N N N 33.151 44.993 8.840 -2.611 -0.152 0.169 C10 YPW 10
YPW C11 C11 C 0 1 Y N N N N N 33.793 46.024 8.034 -3.086 1.103 -0.216 C11 YPW 11
YPW C12 C12 C 0 1 Y N N N N N 34.726 46.931 8.642 -4.436 1.265 -0.537 C12 YPW 12
YPW C13 C13 C 0 1 Y N N N N N 35.033 46.835 10.022 -5.292 0.187 -0.471 C13 YPW 13
YPW C14 C14 C 0 1 Y N N N N N 34.416 45.836 10.804 -4.815 -1.057 -0.087 C14 YPW 14
YPW C15 C15 C 0 1 Y N N N N N 33.491 44.926 10.240 -3.475 -1.225 0.227 C15 YPW 15
YPW F16 F16 F 0 1 N N N N N N 34.707 45.747 12.106 -5.658 -2.111 -0.023 F16 YPW 16
YPW C17 C17 C 0 1 Y N N N N N 29.069 47.979 7.838 3.676 -0.187 -0.174 C17 YPW 17
YPW C18 C18 C 0 1 Y N N N N N 27.985 48.781 7.338 3.315 1.113 0.201 C18 YPW 18
YPW N19 N19 N 0 1 Y N N N N N 28.175 49.958 6.619 4.211 2.085 0.197 N19 YPW 19
YPW C20 C20 C 0 1 Y N N N N N 29.452 50.383 6.370 5.465 1.873 -0.156 C20 YPW 20
YPW C21 C21 C 0 1 Y N N N N N 30.584 49.694 6.803 5.896 0.617 -0.538 C21 YPW 21
YPW C22 C22 C 0 1 Y N N N N N 30.374 48.496 7.534 4.998 -0.438 -0.545 C22 YPW 22
YPW O23 O23 O 0 1 N N N N N N 26.682 48.356 7.590 2.037 1.377 0.571 O23 YPW 23
YPW C24 C24 C 0 1 N N N N N N 25.618 49.182 7.090 1.727 2.730 0.911 C24 YPW 24
YPW C25 C25 C 0 1 N N N N N N 33.534 46.195 6.557 -2.164 2.255 -0.285 C25 YPW 25
YPW N26 N26 N 0 1 N N N N N N 33.344 47.506 6.121 -2.642 3.484 -0.565 N26 YPW 26
YPW O27 O27 O 0 1 N N N N N N 33.518 45.201 5.831 -0.975 2.095 -0.089 O27 YPW 27
YPW C28 C28 C 0 1 N N N N N N 33.097 47.841 4.731 -1.727 4.627 -0.632 C28 YPW 28
YPW C29 C29 C 0 1 N N N N N N 32.803 42.617 8.015 -0.920 0.097 1.965 C29 YPW 29
YPW H4 H4 H 0 1 N N N N N N 27.065 47.062 9.563 4.103 -2.802 -0.657 H4 YPW 30
YPW HN7 HN7 H 0 1 N N N N N N 28.032 43.066 11.324 -0.965 -4.131 0.022 HN7 YPW 31
YPW HN7A HN7A H 0 0 N N N N N N 28.910 42.342 10.152 0.242 -5.234 -0.362 HN7A YPW 32
YPW H9 H9 H 0 1 N N N N N N 31.775 44.371 7.303 -0.545 0.275 -0.148 H9 YPW 33
YPW H12 H12 H 0 1 N N N N N N 35.198 47.694 8.041 -4.808 2.234 -0.836 H12 YPW 34
YPW H13 H13 H 0 1 N N N N N N 35.734 47.522 10.472 -6.336 0.311 -0.719 H13 YPW 35
YPW H15 H15 H 0 1 N N N N N N 33.034 44.173 10.865 -3.108 -2.197 0.520 H15 YPW 36
YPW H20 H20 H 0 1 N N N N N N 29.589 51.297 5.811 6.165 2.695 -0.146 H20 YPW 37
YPW H21 H21 H 0 1 N N N N N N 31.579 50.057 6.591 6.925 0.458 -0.824 H21 YPW 38
YPW H22 H22 H 0 1 N N N N N N 31.237 47.946 7.878 5.312 -1.430 -0.836 H22 YPW 39
YPW H24 H24 H 0 1 N N N N N N 24.649 48.734 7.357 2.410 3.075 1.687 H24 YPW 40
YPW H24A H24A H 0 0 N N N N N N 25.693 50.185 7.535 1.830 3.360 0.028 H24A YPW 41
YPW H24B H24B H 0 0 N N N N N N 25.697 49.259 5.996 0.702 2.785 1.279 H24B YPW 42
YPW HN26 HN26 H 0 0 N N N N N N 33.379 48.245 6.794 -3.590 3.612 -0.721 HN26 YPW 43
YPW H28 H28 H 0 1 N N N N N N 32.980 48.930 4.631 -1.229 4.751 0.329 H28 YPW 44
YPW H28A H28A H 0 0 N N N N N N 33.946 47.506 4.117 -0.983 4.451 -1.409 H28A YPW 45
YPW H28B H28B H 0 0 N N N N N N 32.178 47.341 4.391 -2.291 5.530 -0.868 H28B YPW 46
YPW H29 H29 H 0 1 N N N N N N 33.674 42.746 7.355 0.133 -0.035 2.217 H29 YPW 47
YPW H29A H29A H 0 0 N N N N N N 33.130 42.187 8.973 -1.192 1.146 2.081 H29A YPW 48
YPW H29B H29B H 0 0 N N N N N N 32.078 41.941 7.538 -1.531 -0.513 2.631 H29B YPW 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YPW C1 C2 DOUB Y N 1
YPW C1 N6 SING Y N 2
YPW C1 O8 SING N N 3
YPW C2 N3 SING Y N 4
YPW C2 N7 SING N N 5
YPW N3 C4 DOUB Y N 6
YPW C4 C5 SING Y N 7
YPW C5 N6 DOUB Y N 8
YPW C5 C17 SING N N 9
YPW O8 C9 SING N N 10
YPW C9 C10 SING N N 11
YPW C9 C29 SING N N 12
YPW C10 C11 DOUB Y N 13
YPW C10 C15 SING Y N 14
YPW C11 C12 SING Y N 15
YPW C11 C25 SING N N 16
YPW C12 C13 DOUB Y N 17
YPW C13 C14 SING Y N 18
YPW C14 C15 DOUB Y N 19
YPW C14 F16 SING N N 20
YPW C17 C18 DOUB Y N 21
YPW C17 C22 SING Y N 22
YPW C18 N19 SING Y N 23
YPW C18 O23 SING N N 24
YPW N19 C20 DOUB Y N 25
YPW C20 C21 SING Y N 26
YPW C21 C22 DOUB Y N 27
YPW O23 C24 SING N N 28
YPW C25 N26 SING N N 29
YPW C25 O27 DOUB N N 30
YPW N26 C28 SING N N 31
YPW C4 H4 SING N N 32
YPW N7 HN7 SING N N 33
YPW N7 HN7A SING N N 34
YPW C9 H9 SING N N 35
YPW C12 H12 SING N N 36
YPW C13 H13 SING N N 37
YPW C15 H15 SING N N 38
YPW C20 H20 SING N N 39
YPW C21 H21 SING N N 40
YPW C22 H22 SING N N 41
YPW C24 H24 SING N N 42
YPW C24 H24A SING N N 43
YPW C24 H24B SING N N 44
YPW N26 HN26 SING N N 45
YPW C28 H28 SING N N 46
YPW C28 H28A SING N N 47
YPW C28 H28B SING N N 48
YPW C29 H29 SING N N 49
YPW C29 H29A SING N N 50
YPW C29 H29B SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YPW SMILES ACDLabs 12.01 Fc1cc(c(C(=O)NC)cc1)C(Oc3nc(c2cccnc2OC)cnc3N)C
YPW InChI InChI 1.03 InChI=1S/C20H20FN5O3/c1-11(15-9-12(21)6-7-13(15)18(27)23-2)29-20-17(22)25-10-16(26-20)14-5-4-8-24-19(14)28-3/h4-11H,1-3H3,(H2,22,25)(H,23,27)/t11-/m1/s1
YPW InChIKey InChI 1.03 AMLQLZSHSQNJKQ-LLVKDONJSA-N
YPW SMILES_CANONICAL CACTVS 3.385 CNC(=O)c1ccc(F)cc1[C@@H](C)Oc2nc(cnc2N)c3cccnc3OC
YPW SMILES CACTVS 3.385 CNC(=O)c1ccc(F)cc1[CH](C)Oc2nc(cnc2N)c3cccnc3OC
YPW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H](c1cc(ccc1C(=O)NC)F)Oc2c(ncc(n2)c3cccnc3OC)N
YPW SMILES "OpenEye OEToolkits" 1.7.6 CC(c1cc(ccc1C(=O)NC)F)Oc2c(ncc(n2)c3cccnc3OC)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YPW "SYSTEMATIC NAME" ACDLabs 12.01 2-[(1R)-1-{[3-amino-6-(2-methoxypyridin-3-yl)pyrazin-2-yl]oxy}ethyl]-4-fluoro-N-methylbenzamide
YPW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-[(1R)-1-[3-azanyl-6-(2-methoxypyridin-3-yl)pyrazin-2-yl]oxyethyl]-4-fluoranyl-N-methyl-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YPW 'Create component' 2014-01-16 EBI
YPW 'Initial release' 2014-05-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YPW C1 C 9.002 1.785 1
YPW C2 C 9.002 3.285 2
YPW N3 N 10.301 4.035 3
YPW C4 C 11.600 3.285 4
YPW C5 C 11.600 1.785 5
YPW N6 N 10.301 1.035 6
YPW N7 N 7.702 4.035 7
YPW O8 O 7.702 1.035 8
YPW C9 C 7.702 -0.465 9
YPW C10 C 6.404 -1.215 10
YPW C11 C 5.104 -0.465 11
YPW C12 C 3.805 -1.215 12
YPW C13 C 3.805 -2.715 13
YPW C14 C 5.104 -3.465 14
YPW C15 C 6.404 -2.715 15
YPW F16 F 5.104 -4.965 16
YPW C17 C 12.899 1.035 17
YPW C18 C 12.899 -0.465 18
YPW N19 N 14.198 -1.215 19
YPW C20 C 15.497 -0.465 20
YPW C21 C 15.497 1.035 21
YPW C22 C 14.198 1.785 22
YPW O23 O 11.600 -1.215 23
YPW C24 C 11.600 -2.715 24
YPW C25 C 5.104 1.035 25
YPW N26 N 3.805 1.785 26
YPW O27 O 6.404 1.785 27
YPW C28 C 3.805 3.285 28
YPW C29 C 9.002 -1.215 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YPW C1 C2 DOUBLE NONE 1
YPW C1 N6 SINGLE NONE 2
YPW C1 O8 SINGLE NONE 3
YPW C2 N3 SINGLE NONE 4
YPW C2 N7 SINGLE NONE 5
YPW N3 C4 DOUBLE NONE 6
YPW C4 C5 SINGLE NONE 7
YPW C5 N6 DOUBLE NONE 8
YPW C5 C17 SINGLE NONE 9
YPW O8 C9 SINGLE NONE 10
YPW C9 C10 SINGLE NONE 11
YPW C9 C29 SINGLE BEGINDASH 12
YPW C10 C11 DOUBLE NONE 13
YPW C10 C15 SINGLE NONE 14
YPW C11 C12 SINGLE NONE 15
YPW C11 C25 SINGLE NONE 16
YPW C12 C13 DOUBLE NONE 17
YPW C13 C14 SINGLE NONE 18
YPW C14 C15 DOUBLE NONE 19
YPW C14 F16 SINGLE NONE 20
YPW C17 C18 DOUBLE NONE 21
YPW C17 C22 SINGLE NONE 22
YPW C18 N19 SINGLE NONE 23
YPW C18 O23 SINGLE NONE 24
YPW N19 C20 DOUBLE NONE 25
YPW C20 C21 SINGLE NONE 26
YPW C21 C22 DOUBLE NONE 27
YPW O23 C24 SINGLE NONE 28
YPW C25 N26 SINGLE NONE 29
YPW C25 O27 DOUBLE NONE 30
YPW N26 C28 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YPW MurckoScaffold S1 scaffold c1ccc(COc2cncc(-c3cccnc3)n2)cc1 InChI=1S/C16H13N3O/c1-2-5-13(6-3-1)12-20-16-11-18-10-15(19-16)14-7-4-8-17-9-14/h1-11H,12H2 DDKVSPADGYRNIP-UHFFFAOYSA-N
YPW amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YPW phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YPW pyrazine F3 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
YPW pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YPW C1 S1 1
YPW C2 S1 1
YPW N3 S1 1
YPW C4 S1 1
YPW C5 S1 1
YPW N6 S1 1
YPW O8 S1 1
YPW C9 S1 1
YPW C10 S1 1
YPW C11 S1 1
YPW C12 S1 1
YPW C13 S1 1
YPW C14 S1 1
YPW C15 S1 1
YPW C17 S1 1
YPW C18 S1 1
YPW N19 S1 1
YPW C20 S1 1
YPW C21 S1 1
YPW C22 S1 1
YPW N26 F1 1
YPW C25 F1 1
YPW O27 F1 1
YPW C11 F1 1
YPW C10 F2 1
YPW C11 F2 1
YPW C12 F2 1
YPW C13 F2 1
YPW C14 F2 1
YPW C15 F2 1
YPW C1 F3 1
YPW C2 F3 1
YPW N3 F3 1
YPW C4 F3 1
YPW C5 F3 1
YPW N6 F3 1
YPW C18 F4 1
YPW C17 F4 1
YPW C22 F4 1
YPW C21 F4 1
YPW C20 F4 1
YPW N19 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YPW
_pdbe_chem_comp_rdkit_properties.exactmw 397.155
_pdbe_chem_comp_rdkit_properties.amw 397.410
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 194.747
_pdbe_chem_comp_rdkit_properties.tpsa 112.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.973
_pdbe_chem_comp_rdkit_properties.CrippenMR 101.163
_pdbe_chem_comp_rdkit_properties.chi0v 13.839
_pdbe_chem_comp_rdkit_properties.chi1v 7.222
_pdbe_chem_comp_rdkit_properties.chi2v 3.144
_pdbe_chem_comp_rdkit_properties.chi3v 3.144
_pdbe_chem_comp_rdkit_properties.chi4v 1.941
_pdbe_chem_comp_rdkit_properties.chi0n 33.839
_pdbe_chem_comp_rdkit_properties.chi1n 17.064
_pdbe_chem_comp_rdkit_properties.chi2n 3.144
_pdbe_chem_comp_rdkit_properties.chi3n 3.144
_pdbe_chem_comp_rdkit_properties.chi4n 1.941
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.750
_pdbe_chem_comp_rdkit_properties.kappa1 6.651
_pdbe_chem_comp_rdkit_properties.kappa2 8.509
_pdbe_chem_comp_rdkit_properties.kappa3 4.234
_pdbe_chem_comp_rdkit_properties.Phi 1.951
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YPW UniChem ZINC ZINC000098209651
YPW UniChem PubChem 73819542
YPW UniChem BindingDb 50018822
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YPW C1 0.245 2.206 -0.601 ETKDGv3 1
YPW C2 1.120 3.224 -0.530 ETKDGv3 2
YPW N3 2.421 2.990 0.039 ETKDGv3 3
YPW C4 2.775 1.816 0.473 ETKDGv3 4
YPW C5 1.820 0.687 0.383 ETKDGv3 5
YPW N6 0.640 0.911 -0.117 ETKDGv3 6
YPW N7 0.780 4.533 -0.992 ETKDGv3 7
YPW O8 -1.040 2.403 -1.122 ETKDGv3 8
YPW C9 -1.997 1.350 -1.258 ETKDGv3 9
YPW C10 -2.391 0.791 0.102 ETKDGv3 10
YPW C11 -2.681 -0.522 0.305 ETKDGv3 11
YPW C12 -3.141 -0.975 1.640 ETKDGv3 12
YPW C13 -3.269 -0.106 2.647 ETKDGv3 13
YPW C14 -2.967 1.319 2.433 ETKDGv3 14
YPW C15 -2.562 1.746 1.233 ETKDGv3 15
YPW F16 -3.114 2.200 3.454 ETKDGv3 16
YPW C17 2.140 -0.662 0.901 ETKDGv3 17
YPW C18 3.343 -1.247 0.710 ETKDGv3 18
YPW N19 3.586 -2.568 1.239 ETKDGv3 19
YPW C20 2.672 -3.236 1.879 ETKDGv3 20
YPW C21 1.338 -2.648 2.084 ETKDGv3 21
YPW C22 1.086 -1.423 1.617 ETKDGv3 22
YPW O23 4.343 -0.597 -0.020 ETKDGv3 23
YPW C24 5.621 -1.173 -0.254 ETKDGv3 24
YPW C25 -2.582 -1.540 -0.756 ETKDGv3 25
YPW N26 -1.308 -1.894 -1.309 ETKDGv3 26
YPW O27 -3.625 -2.140 -1.133 ETKDGv3 27
YPW C28 -1.180 -2.869 -2.383 ETKDGv3 28
YPW C29 -3.231 1.890 -1.975 ETKDGv3 29
YPW H4 3.751 1.688 0.922 ETKDGv3 30
YPW HN7 -0.155 4.745 -1.406 ETKDGv3 31
YPW HN7A 1.477 5.307 -0.918 ETKDGv3 32
YPW H9 -1.549 0.571 -1.908 ETKDGv3 33
YPW H12 -3.369 -2.021 1.808 ETKDGv3 34
YPW H13 -3.600 -0.447 3.620 ETKDGv3 35
YPW H15 -2.360 2.800 1.088 ETKDGv3 36
YPW H20 2.893 -4.224 2.259 ETKDGv3 37
YPW H21 0.572 -3.204 2.609 ETKDGv3 38
YPW H22 0.106 -0.986 1.772 ETKDGv3 39
YPW H24 5.513 -2.123 -0.820 ETKDGv3 40
YPW H24A 6.235 -0.468 -0.852 ETKDGv3 41
YPW H24B 6.134 -1.366 0.712 ETKDGv3 42
YPW HN26 -0.442 -1.451 -0.929 ETKDGv3 43
YPW H28 -1.580 -3.851 -2.051 ETKDGv3 44
YPW H28A -1.742 -2.521 -3.275 ETKDGv3 45
YPW H28B -0.111 -2.991 -2.657 ETKDGv3 46
YPW H29 -3.977 1.079 -2.119 ETKDGv3 47
YPW H29A -2.944 2.286 -2.972 ETKDGv3 48
YPW H29B -3.695 2.711 -1.387 ETKDGv3 49
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