Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YPW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.504 -1.983 0.1
2 C2 C C2 N Y N 0 0.903 -3.296 -0.175
3 N3 N N3 N Y N 0 2.175 -3.56 -0.439
4 C4 C C4 N Y N 0 3.067 -2.585 -0.442
5 C5 C C5 N Y N 0 2.674 -1.278 -0.169
6 N6 N N6 N Y N 0 1.396 -1.008 0.096
7 N7 N N7 N N N 0 -0.035 -4.324 -0.171
8 O8 O O8 N N N 0 -0.799 -1.71 0.365
9 C9 C C9 R N N 0 -1.156 -0.335 0.517
10 C10 C C10 N Y N 0 -2.611 -0.152 0.169
11 C11 C C11 N Y N 0 -3.086 1.103 -0.216
12 C12 C C12 N Y N 0 -4.436 1.265 -0.537
13 C13 C C13 N Y N 0 -5.292 0.187 -0.471
14 C14 C C14 N Y N 0 -4.815 -1.057 -0.087
15 C15 C C15 N Y N 0 -3.475 -1.225 0.227
16 F16 F F16 N N N 0 -5.658 -2.111 -0.023
17 C17 C C17 N Y N 0 3.676 -0.187 -0.174
18 C18 C C18 N Y N 0 3.315 1.113 0.201
19 N19 N N19 N Y N 0 4.211 2.085 0.197
20 C20 C C20 N Y N 0 5.465 1.873 -0.156
21 C21 C C21 N Y N 0 5.896 0.617 -0.538
22 C22 C C22 N Y N 0 4.998 -0.438 -0.545
23 O23 O O23 N N N 0 2.037 1.377 0.571
24 C24 C C24 N N N 0 1.727 2.73 0.911
25 C25 C C25 N N N 0 -2.164 2.255 -0.285
26 N26 N N26 N N N 0 -2.642 3.484 -0.565
27 O27 O O27 N N N 0 -0.975 2.095 -0.089
28 C28 C C28 N N N 0 -1.727 4.627 -0.632
29 C29 C C29 N N N 0 -0.92 0.097 1.965
30 H4 H H4 N N N 0 4.103 -2.802 -0.657
31 HN7 H HN7 N N N 0 -0.965 -4.131 0.022
32 HN7A H HN7A N N N 0 0.242 -5.234 -0.362
33 H9 H H9 N N N 0 -0.545 0.275 -0.148
34 H12 H H12 N N N 0 -4.808 2.234 -0.836
35 H13 H H13 N N N 0 -6.336 0.311 -0.719
36 H15 H H15 N N N 0 -3.108 -2.197 0.52
37 H20 H H20 N N N 0 6.165 2.695 -0.146
38 H21 H H21 N N N 0 6.925 0.458 -0.824
39 H22 H H22 N N N 0 5.312 -1.43 -0.836
40 H24 H H24 N N N 0 2.41 3.075 1.687
41 H24A H H24A N N N 0 1.83 3.36 0.028
42 H24B H H24B N N N 0 0.702 2.785 1.279
43 HN26 H HN26 N N N 0 -3.59 3.612 -0.721
44 H28 H H28 N N N 0 -1.229 4.751 0.329
45 H28A H H28A N N N 0 -0.983 4.451 -1.409
46 H28B H H28B N N N 0 -2.291 5.53 -0.868
47 H29 H H29 N N N 0 0.133 -0.035 2.217
48 H29A H H29A N N N 0 -1.192 1.146 2.081
49 H29B H H29B N N N 0 -1.531 -0.513 2.631