Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YJ9    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.51 N N
2 C1 N10 C N sing 1.47 N N
3 C1 C13 C C sing 1.54 N N
4 C1 H1 C H sing 1.09 N N
5 C2 N3 C N sing 1.35 N N
6 C2 O6 C O doub 1.21 N N
7 N3 C4 N C sing 1.47 N N
8 N3 HN3 N H sing 0.97 N N
9 C4 C5 C C sing 1.51 N N
10 C4 C7 C C sing 1.53 N N
11 C4 C8 C C sing 1.53 N N
12 C5 N9 C N doub 1.28 N N
13 C7 C8 C C sing 1.53 N N
14 C7 H7 C H sing 1.09 N N
15 C7 H7A C H sing 1.09 N N
16 C8 H8 C H sing 1.09 N N
17 C8 H8A C H sing 1.09 N N
18 N10 C11 N C sing 1.47 N N
19 N10 C24 N C sing 1.35 N N
20 C11 C12 C C sing 1.55 N N
21 C11 H11 C H sing 1.09 N N
22 C11 H11A C H sing 1.09 N N
23 C12 C13 C C sing 1.55 N N
24 C12 S14 C S sing 1.81 N N
25 C12 H12 C H sing 1.09 N N
26 C13 H13 C H sing 1.09 N N
27 C13 H13A C H sing 1.09 N N
28 S14 C15 S C sing 1.76 N N
29 S14 O22 S O doub 1.42 N N
30 S14 O23 S O doub 1.42 N N
31 C15 C16 C C doub 1.38 N Y
32 C15 C20 C C sing 1.38 N Y
33 C16 C17 C C sing 1.38 N Y
34 C16 CL C CL sing 1.74 N N
35 C17 C18 C C doub 1.38 N Y
36 C17 H17 C H sing 1.08 N N
37 C18 C19 C C sing 1.38 N Y
38 C18 H18 C H sing 1.08 N N
39 C19 C20 C C doub 1.38 N Y
40 C19 H19 C H sing 1.08 N N
41 C20 H20 C H sing 1.08 N N
42 C24 O25 C O doub 1.21 N N
43 C24 C27 C C sing 1.51 N N
44 C26 C27 C C sing 1.53 N N
45 C26 C28 C C sing 1.53 N N
46 C26 H26 C H sing 1.09 N N
47 C26 H26A C H sing 1.09 N N
48 C27 C28 C C sing 1.53 N N
49 C27 C33 C C sing 1.51 N N
50 C28 H28 C H sing 1.09 N N
51 C28 H28A C H sing 1.09 N N
52 C29 C30 C C doub 1.38 N Y
53 C29 C34 C C sing 1.38 N Y
54 C29 H29 C H sing 1.08 N N
55 C30 C31 C C sing 1.38 N Y
56 C30 C35 C C sing 1.51 N N
57 C31 C32 C C doub 1.38 N Y
58 C31 H31 C H sing 1.08 N N
59 C32 C33 C C sing 1.38 N Y
60 C32 H32 C H sing 1.08 N N
61 C33 C34 C C doub 1.38 N Y
62 C34 H34 C H sing 1.08 N N
63 C35 F36 C F sing 1.4 N N
64 C35 F37 C F sing 1.4 N N
65 C35 F38 C F sing 1.4 N N
66 C5 H5 C H sing 1.08 N N
67 N9 H9 N H sing 0.97 N N