data_YJ9
#
_chem_comp.id YJ9
_chem_comp.name
'(2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-[4-(trifluoromethyl)phenyl]cyclopropyl]carbonyl-pyrrolidine-2-carboxamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C26 H25 Cl F3 N3 O4 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-05-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.008
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YJ9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2YJ9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YJ9 C1 C1 C 0 1 N N S N N N 8.204 35.599 21.249 -0.835 1.286 -1.089 C1 YJ9 1
YJ9 C2 C2 C 0 1 N N N N N N 8.368 36.711 22.294 -1.663 2.421 -0.542 C2 YJ9 2
YJ9 N3 N3 N 0 1 N N N N N N 7.317 36.830 23.170 -2.672 2.932 -1.274 N3 YJ9 3
YJ9 C4 C4 C 0 1 N N N N N N 7.282 37.735 24.251 -3.477 4.035 -0.743 C4 YJ9 4
YJ9 C5 C5 C 0 1 N N N N N N 7.798 37.119 25.476 -2.734 5.026 0.116 C5 YJ9 5
YJ9 O6 O6 O 0 1 N N N N N N 9.413 37.393 22.346 -1.420 2.874 0.556 O6 YJ9 6
YJ9 C7 C7 C 0 1 N N N N N N 7.519 39.227 24.067 -4.610 4.570 -1.621 C7 YJ9 7
YJ9 C8 C8 C 0 1 N N N N N N 6.137 38.730 24.365 -4.932 3.736 -0.378 C8 YJ9 8
YJ9 N9 N9 N 0 1 N N N N N N 7.786 37.614 26.675 -1.474 5.188 -0.038 N9 YJ9 9
YJ9 N10 N10 N 0 1 N N N N N N 8.344 36.031 19.884 0.197 0.905 -0.113 N10 YJ9 10
YJ9 C11 C11 C 0 1 N N N N N N 9.313 35.215 19.176 0.004 -0.510 0.251 C11 YJ9 11
YJ9 C12 C12 C 0 1 N N R N N N 9.529 33.982 20.084 -1.492 -0.793 -0.035 C12 YJ9 12
YJ9 C13 C13 C 0 1 N N N N N N 9.317 34.571 21.467 -1.728 0.048 -1.318 C13 YJ9 13
YJ9 S14 S14 S 0 1 N N N N N N 8.452 32.658 19.822 -1.772 -2.556 -0.354 S14 YJ9 14
YJ9 C15 C15 C 0 1 Y N N N N N 8.744 32.211 18.197 -3.525 -2.732 -0.349 C15 YJ9 15
YJ9 C16 C16 C 0 1 Y N N N N N 9.889 31.565 17.711 -4.234 -2.563 0.826 C16 YJ9 16
YJ9 C17 C17 C 0 1 Y N N N N N 10.097 31.211 16.374 -5.611 -2.700 0.829 C17 YJ9 17
YJ9 C18 C18 C 0 1 Y N N N N N 9.140 31.533 15.431 -6.277 -3.006 -0.343 C18 YJ9 18
YJ9 C19 C19 C 0 1 Y N N N N N 7.987 32.182 15.849 -5.568 -3.174 -1.518 C19 YJ9 19
YJ9 C20 C20 C 0 1 Y N N N N N 7.789 32.513 17.180 -4.193 -3.032 -1.522 C20 YJ9 20
YJ9 CL CL CL 0 0 N N N N N N 11.115 31.122 18.762 -3.397 -2.179 2.298 CL YJ9 21
YJ9 O22 O22 O 0 1 N N N N N N 8.850 31.635 20.720 -1.390 -2.890 -1.681 O22 YJ9 22
YJ9 O23 O23 O 0 1 N N N N N N 7.130 33.145 19.907 -1.339 -3.337 0.752 O23 YJ9 23
YJ9 C24 C24 C 0 1 N N N N N N 7.415 36.881 19.348 1.161 1.715 0.367 C24 YJ9 24
YJ9 O25 O25 O 0 1 N N N N N N 6.487 37.290 20.093 1.238 2.862 -0.021 O25 YJ9 25
YJ9 C26 C26 C 0 1 N N N N N N 6.869 36.283 16.970 2.241 1.942 2.717 C26 YJ9 26
YJ9 C27 C27 C 0 1 N N N N N N 7.550 37.256 17.901 2.144 1.196 1.385 C27 YJ9 27
YJ9 C28 C28 C 0 1 N N N N N N 6.308 37.660 17.160 1.575 0.566 2.658 C28 YJ9 28
YJ9 C29 C29 C 0 1 Y N N N N N 11.027 37.908 16.464 5.797 0.636 0.615 C29 YJ9 29
YJ9 C30 C30 C 0 1 Y N N N N N 11.390 39.033 17.219 5.738 -0.474 -0.208 C30 YJ9 30
YJ9 C31 C31 C 0 1 Y N N N N N 10.518 39.568 18.151 4.517 -1.043 -0.515 C31 YJ9 31
YJ9 C32 C32 C 0 1 Y N N N N N 9.278 38.974 18.347 3.353 -0.503 0.000 C32 YJ9 32
YJ9 C33 C33 C 0 1 Y N N N N N 8.880 37.854 17.616 3.412 0.607 0.823 C33 YJ9 33
YJ9 C34 C34 C 0 1 Y N N N N N 9.770 37.325 16.659 4.634 1.176 1.130 C34 YJ9 34
YJ9 C35 C35 C 0 1 N N N N N N 12.731 39.709 17.018 7.007 -1.063 -0.770 C35 YJ9 35
YJ9 F36 F36 F 0 1 N N N N N N 13.146 40.471 18.032 7.501 -2.032 0.110 F36 YJ9 36
YJ9 F37 F37 F 0 1 N N N N N N 13.760 38.876 16.840 6.737 -1.652 -2.010 F37 YJ9 37
YJ9 F38 F38 F 0 1 N N N N N N 12.726 40.536 15.970 7.959 -0.051 -0.932 F38 YJ9 38
YJ9 H1 H1 H 0 1 N N N N N N 7.184 35.212 21.387 -0.367 1.587 -2.026 H1 YJ9 39
YJ9 HN3 HN3 H 0 1 N N N N N N 6.524 36.236 23.032 -2.866 2.569 -2.153 HN3 YJ9 40
YJ9 H7 H7 H 0 1 N N N N N N 8.165 39.923 24.622 -4.818 5.639 -1.577 H7 YJ9 41
YJ9 H7A H7A H 0 1 N N N N N N 7.907 39.790 23.205 -4.757 4.101 -2.594 H7A YJ9 42
YJ9 H8 H8 H 0 1 N N N N N N 5.205 38.818 23.788 -5.292 2.718 -0.534 H8 YJ9 43
YJ9 H8A H8A H 0 1 N N N N N N 5.462 38.952 25.205 -5.353 4.256 0.482 H8A YJ9 44
YJ9 H11 H11 H 0 1 N N N N N N 8.932 34.917 18.188 0.635 -1.151 -0.364 H11 YJ9 45
YJ9 H11A H11A H 0 0 N N N N N N 10.254 35.763 19.023 0.222 -0.663 1.308 H11A YJ9 46
YJ9 H12 H12 H 0 1 N N N N N N 10.512 33.526 19.897 -2.120 -0.441 0.783 H12 YJ9 47
YJ9 H13 H13 H 0 1 N N N N N N 10.234 35.043 21.850 -2.775 0.338 -1.402 H13 YJ9 48
YJ9 H13A H13A H 0 0 N N N N N N 9.018 33.800 22.193 -1.406 -0.501 -2.203 H13A YJ9 49
YJ9 H17 H17 H 0 1 N N N N N N 10.997 30.691 16.082 -6.166 -2.568 1.746 H17 YJ9 50
YJ9 H18 H18 H 0 1 N N N N N N 9.286 31.285 14.390 -7.352 -3.113 -0.341 H18 YJ9 51
YJ9 H19 H19 H 0 1 N N N N N N 7.229 32.434 15.122 -6.088 -3.414 -2.433 H19 YJ9 52
YJ9 H20 H20 H 0 1 N N N N N N 6.877 33.019 17.459 -3.640 -3.160 -2.441 H20 YJ9 53
YJ9 H26 H26 H 0 1 N N N N N N 7.235 35.772 16.067 3.222 2.007 3.187 H26 YJ9 54
YJ9 H26A H26A H 0 0 N N N N N N 6.429 35.293 17.158 1.594 2.809 2.857 H26A YJ9 55
YJ9 H28 H28 H 0 1 N N N N N N 6.137 38.470 16.436 2.118 -0.275 3.089 H28 YJ9 56
YJ9 H28A H28A H 0 0 N N N N N N 5.326 37.989 17.532 0.490 0.527 2.759 H28A YJ9 57
YJ9 H29 H29 H 0 1 N N N N N N 11.712 37.495 15.738 6.752 1.077 0.858 H29 YJ9 58
YJ9 H31 H31 H 0 1 N N N N N N 10.800 40.441 18.722 4.471 -1.909 -1.158 H31 YJ9 59
YJ9 H32 H32 H 0 1 N N N N N N 8.605 39.389 19.083 2.399 -0.947 -0.240 H32 YJ9 60
YJ9 H34 H34 H 0 1 N N N N N N 9.480 36.465 16.073 4.679 2.043 1.773 H34 YJ9 61
YJ9 H5 H5 H 0 1 N N N N N N 8.240 36.139 25.368 -3.266 5.600 0.860 H5 YJ9 62
YJ9 H9 H9 H 0 1 N N N N N N 8.201 36.994 27.341 -0.996 5.826 0.514 H9 YJ9 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YJ9 C1 C2 SING N N 1
YJ9 C1 N10 SING N N 2
YJ9 C1 C13 SING N N 3
YJ9 C1 H1 SING N N 4
YJ9 C2 N3 SING N N 5
YJ9 C2 O6 DOUB N N 6
YJ9 N3 C4 SING N N 7
YJ9 N3 HN3 SING N N 8
YJ9 C4 C5 SING N N 9
YJ9 C4 C7 SING N N 10
YJ9 C4 C8 SING N N 11
YJ9 C5 N9 DOUB N N 12
YJ9 C7 C8 SING N N 13
YJ9 C7 H7 SING N N 14
YJ9 C7 H7A SING N N 15
YJ9 C8 H8 SING N N 16
YJ9 C8 H8A SING N N 17
YJ9 N10 C11 SING N N 18
YJ9 N10 C24 SING N N 19
YJ9 C11 C12 SING N N 20
YJ9 C11 H11 SING N N 21
YJ9 C11 H11A SING N N 22
YJ9 C12 C13 SING N N 23
YJ9 C12 S14 SING N N 24
YJ9 C12 H12 SING N N 25
YJ9 C13 H13 SING N N 26
YJ9 C13 H13A SING N N 27
YJ9 S14 C15 SING N N 28
YJ9 S14 O22 DOUB N N 29
YJ9 S14 O23 DOUB N N 30
YJ9 C15 C16 DOUB Y N 31
YJ9 C15 C20 SING Y N 32
YJ9 C16 C17 SING Y N 33
YJ9 C16 CL SING N N 34
YJ9 C17 C18 DOUB Y N 35
YJ9 C17 H17 SING N N 36
YJ9 C18 C19 SING Y N 37
YJ9 C18 H18 SING N N 38
YJ9 C19 C20 DOUB Y N 39
YJ9 C19 H19 SING N N 40
YJ9 C20 H20 SING N N 41
YJ9 C24 O25 DOUB N N 42
YJ9 C24 C27 SING N N 43
YJ9 C26 C27 SING N N 44
YJ9 C26 C28 SING N N 45
YJ9 C26 H26 SING N N 46
YJ9 C26 H26A SING N N 47
YJ9 C27 C28 SING N N 48
YJ9 C27 C33 SING N N 49
YJ9 C28 H28 SING N N 50
YJ9 C28 H28A SING N N 51
YJ9 C29 C30 DOUB Y N 52
YJ9 C29 C34 SING Y N 53
YJ9 C29 H29 SING N N 54
YJ9 C30 C31 SING Y N 55
YJ9 C30 C35 SING N N 56
YJ9 C31 C32 DOUB Y N 57
YJ9 C31 H31 SING N N 58
YJ9 C32 C33 SING Y N 59
YJ9 C32 H32 SING N N 60
YJ9 C33 C34 DOUB Y N 61
YJ9 C34 H34 SING N N 62
YJ9 C35 F36 SING N N 63
YJ9 C35 F37 SING N N 64
YJ9 C35 F38 SING N N 65
YJ9 C5 H5 SING N N 66
YJ9 N9 H9 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YJ9 SMILES ACDLabs 12.01 'O=S(=O)(c1ccccc1Cl)C5CC(C(=O)NC2(C=[N@H])CC2)N(C(=O)C4(c3ccc(cc3)C(F)(F)F)CC4)C5'
YJ9 SMILES_CANONICAL CACTVS 3.370 'FC(F)(F)c1ccc(cc1)C2(CC2)C(=O)N3C[C@@H](C[C@H]3C(=O)NC4(CC4)C=N)[S](=O)(=O)c5ccccc5Cl'
YJ9 SMILES CACTVS 3.370 'FC(F)(F)c1ccc(cc1)C2(CC2)C(=O)N3C[CH](C[CH]3C(=O)NC4(CC4)C=N)[S](=O)(=O)c5ccccc5Cl'
YJ9 SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.2 'c1ccc(c(c1)S(=O)(=O)[C@@H]2C[C@H](N(C2)C(=O)C3(CC3)c4ccc(cc4)C(F)(F)F)C(=O)NC5(CC5)C=N)Cl'
YJ9 SMILES 'OpenEye OEToolkits' 1.7.2 'c1ccc(c(c1)S(=O)(=O)C2CC(N(C2)C(=O)C3(CC3)c4ccc(cc4)C(F)(F)F)C(=O)NC5(CC5)C=N)Cl'
YJ9 InChI InChI 1.03 'InChI=1S/C26H25ClF3N3O4S/c27-19-3-1-2-4-21(19)38(36,37)18-13-20(22(34)32-24(15-31)9-10-24)33(14-18)23(35)25(11-12-25)16-5-7-17(8-6-16)26(28,29)30/h1-8,15,18,20,31H,9-14H2,(H,32,34)/b31-15+/t18-,20+/m1/s1'
YJ9 InChIKey InChI 1.03 ACNGWBKPMPBISI-UTGIELOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YJ9 'SYSTEMATIC NAME' ACDLabs 12.01 '(4R)-4-[(2-chlorophenyl)sulfonyl]-N-[1-(iminomethyl)cyclopropyl]-1-({1-[4-(trifluoromethyl)phenyl]cyclopropyl}carbonyl)-L-prolinamide'
YJ9 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.2 '(2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-[4-(trifluoromethyl)phenyl]cyclopropyl]carbonyl-pyrrolidine-2-carboxamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YJ9 'Create component' 2011-05-19 EBI
YJ9 'Modify aromatic_flag' 2011-06-04 RCSB
YJ9 'Modify descriptor' 2011-06-04 RCSB
YJ9 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id YJ9
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C5
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YJ9 C1 C 1.244 -1.021 1
YJ9 C2 C 2.581 -0.343 2
YJ9 N3 N 3.838 -1.163 3
YJ9 C4 C 5.175 -0.485 4
YJ9 C5 C 6.076 -1.686 5
YJ9 O6 O 2.664 1.155 6
YJ9 C7 C 4.741 0.949 7
YJ9 C8 C 6.202 0.610 8
YJ9 N9 N 7.565 -1.507 9
YJ9 N10 N -0.092 -0.336 10
YJ9 C11 C -1.153 -1.395 11
YJ9 C12 C -0.477 -2.734 12
YJ9 C13 C 1.005 -2.501 13
YJ9 S14 S -1.160 -4.067 14
YJ9 C15 C -1.843 -5.402 15
YJ9 C16 C -3.345 -5.477 16
YJ9 C17 C -4.025 -6.812 17
YJ9 C18 C -3.215 -8.073 18
YJ9 C19 C -1.713 -7.998 19
YJ9 C20 C -1.032 -6.663 20
YJ9 CL Cl -4.157 -4.218 21
YJ9 O22 O 0.175 -4.751 22
YJ9 O23 O -2.495 -3.383 23
YJ9 C24 C -0.322 1.146 24
YJ9 O25 O 0.846 2.087 25
YJ9 C26 C -2.496 0.403 26
YJ9 C27 C -1.721 1.685 27
YJ9 C28 C -3.222 1.715 28
YJ9 C29 C -2.271 5.615 29
YJ9 C30 C -0.852 6.102 30
YJ9 C31 C 0.276 5.115 31
YJ9 C32 C -0.012 3.643 32
YJ9 C33 C -1.432 3.159 33
YJ9 C34 C -2.563 4.144 34
YJ9 C35 C -0.563 7.573 35
YJ9 F36 F -2.035 7.862 36
YJ9 F37 F -1.049 8.992 37
YJ9 F38 F 0.856 8.058 38
YJ9 H9 H 8.465 -2.707 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YJ9 C1 C2 SINGLE BEGINDASH 1
YJ9 C1 N10 SINGLE NONE 2
YJ9 C1 C13 SINGLE NONE 3
YJ9 C2 N3 SINGLE NONE 4
YJ9 C2 O6 DOUBLE NONE 5
YJ9 N3 C4 SINGLE NONE 6
YJ9 C4 C5 SINGLE ENDUPRIGHT 7
YJ9 C4 C7 SINGLE NONE 8
YJ9 C4 C8 SINGLE NONE 9
YJ9 C5 N9 DOUBLE NONE 10
YJ9 C7 C8 SINGLE NONE 11
YJ9 N10 C11 SINGLE NONE 12
YJ9 N10 C24 SINGLE NONE 13
YJ9 C11 C12 SINGLE NONE 14
YJ9 C12 C13 SINGLE NONE 15
YJ9 C12 S14 SINGLE BEGINWEDGE 16
YJ9 S14 C15 SINGLE NONE 17
YJ9 S14 O22 DOUBLE NONE 18
YJ9 S14 O23 DOUBLE NONE 19
YJ9 C15 C16 DOUBLE NONE 20
YJ9 C15 C20 SINGLE NONE 21
YJ9 C16 C17 SINGLE NONE 22
YJ9 C16 CL SINGLE NONE 23
YJ9 C17 C18 DOUBLE NONE 24
YJ9 C18 C19 SINGLE NONE 25
YJ9 C19 C20 DOUBLE NONE 26
YJ9 C24 O25 DOUBLE NONE 27
YJ9 C24 C27 SINGLE NONE 28
YJ9 C26 C27 SINGLE NONE 29
YJ9 C26 C28 SINGLE NONE 30
YJ9 C27 C28 SINGLE NONE 31
YJ9 C27 C33 SINGLE NONE 32
YJ9 C29 C30 DOUBLE NONE 33
YJ9 C29 C34 SINGLE NONE 34
YJ9 C30 C31 SINGLE NONE 35
YJ9 C30 C35 SINGLE NONE 36
YJ9 C31 C32 DOUBLE NONE 37
YJ9 C32 C33 SINGLE NONE 38
YJ9 C33 C34 DOUBLE NONE 39
YJ9 C35 F36 SINGLE NONE 40
YJ9 C35 F37 SINGLE NONE 41
YJ9 C35 F38 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YJ9 MurckoScaffold S1 scaffold 'O=C(NC1CC1)[C@@H]1C[C@@H](S(=O)(=O)c2ccccc2)CN1C(=O)C1(c2ccccc2)CC1' InChI=1S/C24H26N2O4S/c27-22(25-18-11-12-18)21-15-20(31(29,30)19-9-5-2-6-10-19)16-26(21)23(28)24(13-14-24)17-7-3-1-4-8-17/h1-10,18,20-21H,11-16H2,(H,25,27)/t20-,21+/m1/s1 CPCGQEHNSIHFGN-RTWAWAEBSA-N
YJ9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YJ9 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
YJ9 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
YJ9 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YJ9 Z124321786 F5 fragment CC(N)C(=O)NC(C)(C)C.Cl 'InChI=1S/C7H16N2O.ClH/c1-5(8)6(10)9-7(2,3)4;/h5H,8H2,1-4H3,(H,9,10);1H' SNGPSZNTJXDBJM-UHFFFAOYSA-N
YJ9 Z270979606 F6 fragment CC(C)(C(N)=O)c1ccccc1 InChI=1S/C10H13NO/c1-10(2,9(11)12)8-6-4-3-5-7-8/h3-7H,1-2H3,(H2,11,12) VKLQYTLWERZJEP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YJ9 C1 S1 1
YJ9 C2 S1 1
YJ9 N3 S1 1
YJ9 C4 S1 1
YJ9 O6 S1 1
YJ9 C7 S1 1
YJ9 C8 S1 1
YJ9 N10 S1 1
YJ9 C11 S1 1
YJ9 C12 S1 1
YJ9 C13 S1 1
YJ9 S14 S1 1
YJ9 C15 S1 1
YJ9 C16 S1 1
YJ9 C17 S1 1
YJ9 C18 S1 1
YJ9 C19 S1 1
YJ9 C20 S1 1
YJ9 O22 S1 1
YJ9 O23 S1 1
YJ9 C24 S1 1
YJ9 O25 S1 1
YJ9 C26 S1 1
YJ9 C27 S1 1
YJ9 C28 S1 1
YJ9 C29 S1 1
YJ9 C30 S1 1
YJ9 C31 S1 1
YJ9 C32 S1 1
YJ9 C33 S1 1
YJ9 C34 S1 1
YJ9 N3 F1 1
YJ9 C2 F1 1
YJ9 O6 F1 1
YJ9 C1 F1 1
YJ9 N10 F1 2
YJ9 C24 F1 2
YJ9 O25 F1 2
YJ9 C27 F1 2
YJ9 C4 F2 1
YJ9 C7 F2 1
YJ9 C8 F2 1
YJ9 C26 F2 2
YJ9 C27 F2 2
YJ9 C28 F2 2
YJ9 O6 F3 1
YJ9 C2 F3 1
YJ9 C1 F3 1
YJ9 N10 F3 1
YJ9 C15 F4 1
YJ9 C16 F4 1
YJ9 C17 F4 1
YJ9 C18 F4 1
YJ9 C19 F4 1
YJ9 C20 F4 1
YJ9 C29 F4 2
YJ9 C30 F4 2
YJ9 C31 F4 2
YJ9 C32 F4 2
YJ9 C33 F4 2
YJ9 C34 F4 2
YJ9 CL F5 1
YJ9 C13 F5 1
YJ9 C1 F5 1
YJ9 N10 F5 1
YJ9 C2 F5 1
YJ9 O6 F5 1
YJ9 N3 F5 1
YJ9 C4 F5 1
YJ9 C5 F5 1
YJ9 C7 F5 1
YJ9 C8 F5 1
YJ9 C26 F6 1
YJ9 C27 F6 1
YJ9 C28 F6 1
YJ9 C24 F6 1
YJ9 O25 F6 1
YJ9 N10 F6 1
YJ9 C33 F6 1
YJ9 C32 F6 1
YJ9 C31 F6 1
YJ9 C30 F6 1
YJ9 C29 F6 1
YJ9 C34 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YJ9
_pdbe_chem_comp_rdkit_properties.exactmw 567.121
_pdbe_chem_comp_rdkit_properties.amw 568.017
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.423
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 257.564
_pdbe_chem_comp_rdkit_properties.tpsa 107.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.915
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.829
_pdbe_chem_comp_rdkit_properties.chi0v 19.467
_pdbe_chem_comp_rdkit_properties.chi1v 11.609
_pdbe_chem_comp_rdkit_properties.chi2v 6.964
_pdbe_chem_comp_rdkit_properties.chi3v 6.964
_pdbe_chem_comp_rdkit_properties.chi4v 4.481
_pdbe_chem_comp_rdkit_properties.chi0n 42.895
_pdbe_chem_comp_rdkit_properties.chi1n 22.142
_pdbe_chem_comp_rdkit_properties.chi2n 4.994
_pdbe_chem_comp_rdkit_properties.chi3n 4.994
_pdbe_chem_comp_rdkit_properties.chi4n 2.963
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.920
_pdbe_chem_comp_rdkit_properties.kappa1 9.922
_pdbe_chem_comp_rdkit_properties.kappa2 9.082
_pdbe_chem_comp_rdkit_properties.kappa3 4.594
_pdbe_chem_comp_rdkit_properties.Phi 2.371
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YJ9 C1 -0.724 0.769 -0.820 ETKDGv3 1
YJ9 C2 -1.309 2.068 -0.333 ETKDGv3 2
YJ9 N3 -1.839 3.013 -1.270 ETKDGv3 3
YJ9 C4 -2.446 4.269 -0.837 ETKDGv3 4
YJ9 C5 -3.837 4.224 -0.286 ETKDGv3 5
YJ9 O6 -1.355 2.309 0.905 ETKDGv3 6
YJ9 C7 -2.053 5.487 -1.656 ETKDGv3 7
YJ9 C8 -1.484 5.291 -0.254 ETKDGv3 8
YJ9 N9 -4.842 4.150 -1.079 ETKDGv3 9
YJ9 N10 0.507 0.469 -0.100 ETKDGv3 10
YJ9 C11 0.382 -0.693 0.765 ETKDGv3 11
YJ9 C12 -1.101 -1.057 0.739 ETKDGv3 12
YJ9 C13 -1.659 -0.406 -0.528 ETKDGv3 13
YJ9 S14 -1.375 -2.829 0.771 ETKDGv3 14
YJ9 C15 -3.109 -3.160 0.660 ETKDGv3 15
YJ9 C16 -3.955 -2.920 1.688 ETKDGv3 16
YJ9 C17 -5.400 -3.197 1.531 ETKDGv3 17
YJ9 C18 -5.877 -3.675 0.376 ETKDGv3 18
YJ9 C19 -4.961 -3.926 -0.751 ETKDGv3 19
YJ9 C20 -3.653 -3.683 -0.619 ETKDGv3 20
YJ9 CL -3.413 -2.270 3.232 ETKDGv3 21
YJ9 O22 -0.662 -3.468 -0.389 ETKDGv3 22
YJ9 O23 -0.824 -3.410 2.043 ETKDGv3 23
YJ9 C24 1.733 1.194 -0.304 ETKDGv3 24
YJ9 O25 1.811 2.038 -1.238 ETKDGv3 25
YJ9 C26 3.655 2.204 1.052 ETKDGv3 26
YJ9 C27 2.942 0.948 0.557 ETKDGv3 27
YJ9 C28 2.839 1.366 2.021 ETKDGv3 28
YJ9 C29 5.540 -1.266 -1.201 ETKDGv3 29
YJ9 C30 5.483 -2.415 -0.503 ETKDGv3 30
YJ9 C31 4.573 -2.501 0.668 ETKDGv3 31
YJ9 C32 3.799 -1.462 1.003 ETKDGv3 32
YJ9 C33 3.848 -0.206 0.216 ETKDGv3 33
YJ9 C34 4.675 -0.125 -0.840 ETKDGv3 34
YJ9 C35 6.397 -3.563 -0.847 ETKDGv3 35
YJ9 F36 7.650 -3.325 -0.314 ETKDGv3 36
YJ9 F37 6.507 -3.699 -2.221 ETKDGv3 37
YJ9 F38 5.908 -4.751 -0.332 ETKDGv3 38
YJ9 H1 -0.518 0.821 -1.913 ETKDGv3 39
YJ9 HN3 -1.893 2.757 -2.282 ETKDGv3 40
YJ9 H7 -1.314 5.304 -2.465 ETKDGv3 41
YJ9 H7A -2.815 6.293 -1.718 ETKDGv3 42
YJ9 H8 -1.917 5.978 0.504 ETKDGv3 43
YJ9 H8A -0.415 4.990 -0.244 ETKDGv3 44
YJ9 H11 1.011 -1.515 0.362 ETKDGv3 45
YJ9 H11A 0.696 -0.449 1.802 ETKDGv3 46
YJ9 H12 -1.598 -0.598 1.621 ETKDGv3 47
YJ9 H13 -1.613 -1.118 -1.382 ETKDGv3 48
YJ9 H13A -2.718 -0.095 -0.390 ETKDGv3 49
YJ9 H17 -6.078 -3.011 2.355 ETKDGv3 50
YJ9 H18 -6.935 -3.874 0.266 ETKDGv3 51
YJ9 H19 -5.352 -4.306 -1.687 ETKDGv3 52
YJ9 H20 -2.994 -3.866 -1.458 ETKDGv3 53
YJ9 H26 3.175 3.177 0.809 ETKDGv3 54
YJ9 H26A 4.751 2.116 1.214 ETKDGv3 55
YJ9 H28 1.881 1.843 2.320 ETKDGv3 56
YJ9 H28A 3.464 0.797 2.741 ETKDGv3 57
YJ9 H29 6.219 -1.160 -2.038 ETKDGv3 58
YJ9 H31 4.529 -3.405 1.262 ETKDGv3 59
YJ9 H32 3.137 -1.544 1.855 ETKDGv3 60
YJ9 H34 4.718 0.778 -1.437 ETKDGv3 61
YJ9 H5 -3.989 4.202 0.790 ETKDGv3 62
YJ9 H9 -5.801 4.095 -0.706 ETKDGv3 63
#