Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : YJ9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.835 1.286 -1.089
2 C2 C C2 N N N 0 -1.663 2.421 -0.542
3 N3 N N3 N N N 0 -2.672 2.932 -1.274
4 C4 C C4 N N N 0 -3.477 4.035 -0.743
5 C5 C C5 N N N 0 -2.734 5.026 0.116
6 O6 O O6 N N N 0 -1.42 2.874 0.556
7 C7 C C7 N N N 0 -4.61 4.57 -1.621
8 C8 C C8 N N N 0 -4.932 3.736 -0.378
9 N9 N N9 N N N 0 -1.474 5.188 -0.038
10 N10 N N10 N N N 0 0.197 0.905 -0.113
11 C11 C C11 N N N 0 0.004 -0.51 0.251
12 C12 C C12 R N N 0 -1.492 -0.793 -0.035
13 C13 C C13 N N N 0 -1.728 0.048 -1.318
14 S14 S S14 N N N 0 -1.772 -2.556 -0.354
15 C15 C C15 N Y N 0 -3.525 -2.732 -0.349
16 C16 C C16 N Y N 0 -4.234 -2.563 0.826
17 C17 C C17 N Y N 0 -5.611 -2.7 0.829
18 C18 C C18 N Y N 0 -6.277 -3.006 -0.343
19 C19 C C19 N Y N 0 -5.568 -3.174 -1.518
20 C20 C C20 N Y N 0 -4.193 -3.032 -1.522
21 CL CL CL N N N 0 -3.397 -2.179 2.298
22 O22 O O22 N N N 0 -1.39 -2.89 -1.681
23 O23 O O23 N N N 0 -1.339 -3.337 0.752
24 C24 C C24 N N N 0 1.161 1.715 0.367
25 O25 O O25 N N N 0 1.238 2.862 -0.021
26 C26 C C26 N N N 0 2.241 1.942 2.717
27 C27 C C27 N N N 0 2.144 1.196 1.385
28 C28 C C28 N N N 0 1.575 0.566 2.658
29 C29 C C29 N Y N 0 5.797 0.636 0.615
30 C30 C C30 N Y N 0 5.738 -0.474 -0.208
31 C31 C C31 N Y N 0 4.517 -1.043 -0.515
32 C32 C C32 N Y N 0 3.353 -0.503 0.0
33 C33 C C33 N Y N 0 3.412 0.607 0.823
34 C34 C C34 N Y N 0 4.634 1.176 1.13
35 C35 C C35 N N N 0 7.007 -1.063 -0.77
36 F36 F F36 N N N 0 7.501 -2.032 0.11
37 F37 F F37 N N N 0 6.737 -1.652 -2.01
38 F38 F F38 N N N 0 7.959 -0.051 -0.932
39 H1 H H1 N N N 0 -0.367 1.587 -2.026
40 HN3 H HN3 N N N 0 -2.866 2.569 -2.153
41 H7 H H7 N N N 0 -4.818 5.639 -1.577
42 H7A H H7A N N N 0 -4.757 4.101 -2.594
43 H8 H H8 N N N 0 -5.292 2.718 -0.534
44 H8A H H8A N N N 0 -5.353 4.256 0.482
45 H11 H H11 N N N 0 0.635 -1.151 -0.364
46 H11A H H11A N N N 0 0.222 -0.663 1.308
47 H12 H H12 N N N 0 -2.12 -0.441 0.783
48 H13 H H13 N N N 0 -2.775 0.338 -1.402
49 H13A H H13A N N N 0 -1.406 -0.501 -2.203
50 H17 H H17 N N N 0 -6.166 -2.568 1.746
51 H18 H H18 N N N 0 -7.352 -3.113 -0.341
52 H19 H H19 N N N 0 -6.088 -3.414 -2.433
53 H20 H H20 N N N 0 -3.64 -3.16 -2.441
54 H26 H H26 N N N 0 3.222 2.007 3.187
55 H26A H H26A N N N 0 1.594 2.809 2.857
56 H28 H H28 N N N 0 2.118 -0.275 3.089
57 H28A H H28A N N N 0 0.49 0.527 2.759
58 H29 H H29 N N N 0 6.752 1.077 0.858
59 H31 H H31 N N N 0 4.471 -1.909 -1.158
60 H32 H H32 N N N 0 2.399 -0.947 -0.24
61 H34 H H34 N N N 0 4.679 2.043 1.773
62 H5 H H5 N N N 0 -3.266 5.6 0.86
63 H9 H H9 N N N 0 -0.996 5.826 0.514