Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YFP    

Bonds between two atoms of the molecule

Total Number of Bonds: 127


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.53 N N
2 C02 C03 C C sing 1.53 N N
3 C03 C04 C C sing 1.53 N N
4 C04 C05 C C sing 1.53 N N
5 C05 C06 C C sing 1.53 N N
6 C06 C07 C C sing 1.53 N N
7 C40 C39 C C sing 1.53 N N
8 C07 C08 C C sing 1.53 N N
9 C39 C38 C C sing 1.53 N N
10 C08 C09 C C sing 1.53 N N
11 C38 C37 C C sing 1.53 N N
12 C10 C09 C C sing 1.53 N N
13 C10 C11 C C sing 1.53 N N
14 C37 C36 C C sing 1.53 N N
15 C11 C12 C C sing 1.53 N N
16 C36 C35 C C sing 1.53 N N
17 C12 C13 C C sing 1.53 N N
18 C13 C14 C C sing 1.53 N N
19 C35 C33 C C sing 1.51 N N
20 O34 C33 O C doub 1.21 N N
21 C33 O32 C O sing 1.34 N N
22 C14 C15 C C sing 1.53 N N
23 C15 C16 C C sing 1.51 N N
24 O32 C20 O C sing 1.45 N N
25 C16 O18 C O sing 1.34 N N
26 C16 O17 C O doub 1.21 N N
27 C20 C19 C C sing 1.53 N N
28 C20 C21 C C sing 1.53 N N
29 C19 O18 C O sing 1.45 N N
30 C21 O22 C O sing 1.43 N N
31 O24 P23 O P doub 1.48 N N
32 O22 P23 O P sing 1.61 N N
33 P23 O26 P O sing 1.61 N N
34 P23 O25 P O sing 1.61 N N
35 C01 H012 C H sing 1.09 N N
36 C01 H011 C H sing 1.09 N N
37 C01 H013 C H sing 1.09 N N
38 C02 H022 C H sing 1.09 N N
39 C02 H021 C H sing 1.09 N N
40 C03 H032 C H sing 1.09 N N
41 C03 H031 C H sing 1.09 N N
42 C04 H041 C H sing 1.09 N N
43 C04 H042 C H sing 1.09 N N
44 C05 H052 C H sing 1.09 N N
45 C05 H051 C H sing 1.09 N N
46 C06 H061 C H sing 1.09 N N
47 C06 H062 C H sing 1.09 N N
48 C07 H071 C H sing 1.09 N N
49 C07 H072 C H sing 1.09 N N
50 C08 H081 C H sing 1.09 N N
51 C08 H082 C H sing 1.09 N N
52 C09 H092 C H sing 1.09 N N
53 C09 H091 C H sing 1.09 N N
54 C10 H101 C H sing 1.09 N N
55 C10 H102 C H sing 1.09 N N
56 C11 H112 C H sing 1.09 N N
57 C11 H111 C H sing 1.09 N N
58 C12 H121 C H sing 1.09 N N
59 C12 H122 C H sing 1.09 N N
60 C13 H131 C H sing 1.09 N N
61 C13 H132 C H sing 1.09 N N
62 C14 H141 C H sing 1.09 N N
63 C14 H142 C H sing 1.09 N N
64 C15 H151 C H sing 1.09 N N
65 C15 H152 C H sing 1.09 N N
66 C19 H191 C H sing 1.09 N N
67 C19 H192 C H sing 1.09 N N
68 C20 H1 C H sing 1.09 N N
69 C21 H211 C H sing 1.09 N N
70 C21 H212 C H sing 1.09 N N
71 C35 H351 C H sing 1.09 N N
72 C35 H352 C H sing 1.09 N N
73 C36 H361 C H sing 1.09 N N
74 C36 H362 C H sing 1.09 N N
75 C37 H372 C H sing 1.09 N N
76 C37 H371 C H sing 1.09 N N
77 C38 H382 C H sing 1.09 N N
78 C38 H381 C H sing 1.09 N N
79 C39 H392 C H sing 1.09 N N
80 C39 H391 C H sing 1.09 N N
81 C40 H402 C H sing 1.09 N N
82 C40 H401 C H sing 1.09 N N
83 O25 H3 O H sing 0.97 N N
84 O26 C27 O C sing 1.43 N N
85 C27 C28 C C sing 1.53 N N
86 C28 C30 C C sing 1.53 N N
87 C28 O29 C O sing 1.43 N N
88 C30 O31 C O sing 1.43 N N
89 C40 C41 C C sing 1.53 N N
90 C41 C42 C C sing 1.51 N N
91 C42 C43 C C doub 1.31 N N
92 C27 H2 C H sing 1.09 N N
93 C27 H4 C H sing 1.09 N N
94 C28 H5 C H sing 1.09 N N
95 C30 H6 C H sing 1.09 N N
96 C30 H7 C H sing 1.09 N N
97 O29 H8 O H sing 0.97 N N
98 O31 H9 O H sing 0.97 N N
99 C41 H10 C H sing 1.09 N N
100 C41 H11 C H sing 1.09 N N
101 C42 H12 C H sing 1.08 N N
102 C43 H13 C H sing 1.08 N N
103 C43 C44 C C sing 1.51 N N
104 C44 H15 C H sing 1.09 N N
105 C44 H14 C H sing 1.09 N N
106 C44 C45 C C sing 1.53 N N
107 C45 C46 C C sing 1.53 N N
108 C46 C47 C C sing 1.53 N N
109 C47 C48 C C sing 1.53 N N
110 C48 C49 C C sing 1.53 N N
111 C49 C50 C C sing 1.53 N N
112 C50 C51 C C sing 1.53 N N
113 C45 H16 C H sing 1.09 N N
114 C45 H17 C H sing 1.09 N N
115 C46 H18 C H sing 1.09 N N
116 C46 H19 C H sing 1.09 N N
117 C47 H20 C H sing 1.09 N N
118 C47 H21 C H sing 1.09 N N
119 C48 H22 C H sing 1.09 N N
120 C48 H23 C H sing 1.09 N N
121 C49 H24 C H sing 1.09 N N
122 C49 H25 C H sing 1.09 N N
123 C50 H26 C H sing 1.09 N N
124 C50 H27 C H sing 1.09 N N
125 C51 H28 C H sing 1.09 N N
126 C51 H29 C H sing 1.09 N N
127 C51 H30 C H sing 1.09 N N