Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YFP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 128


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 -18.446 -7.242 -0.949
2 C02 C C2 N N N 0 -17.515 -6.607 0.086
3 C03 C C3 N N N 0 -16.3 -6.005 -0.623
4 C04 C C4 N N N 0 -15.368 -5.371 0.412
5 C05 C C5 N N N 0 -14.153 -4.769 -0.296
6 C06 C C6 N N N 0 -13.222 -4.135 0.738
7 C07 C C7 N N N 0 -12.006 -3.533 0.03
8 C08 C C8 N N N 0 -11.075 -2.899 1.064
9 C09 C C9 N N N 0 -9.86 -2.297 0.356
10 C10 C C10 N N N 0 -8.928 -1.663 1.391
11 C11 C C11 N N N 0 -7.713 -1.061 0.682
12 C12 C C12 N N N 0 -6.782 -0.426 1.717
13 C13 C C13 N N N 0 -5.567 0.175 1.008
14 C14 C C14 N N N 0 -4.635 0.81 2.043
15 C15 C C15 N N N 0 -3.42 1.411 1.334
16 C16 C C16 N N N 0 -2.502 2.036 2.353
17 C19 C C17 N N N 0 -0.53 3.21 2.995
18 C20 C C18 R N N 0 0.713 3.835 2.358
19 C21 C C19 N N N 0 0.286 4.838 1.284
20 C33 C C20 N N N 0 2.848 2.999 1.706
21 C35 C C21 N N N 0 3.751 1.961 1.092
22 C36 C C22 N N N 0 5.203 2.439 1.168
23 C37 C C23 N N N 0 6.12 1.386 0.544
24 C38 C C24 N N N 0 7.571 1.864 0.62
25 C39 C C25 N N N 0 8.489 0.811 -0.004
26 C40 C C26 N N N 0 9.94 1.289 0.072
27 O17 O O1 N N N 0 -2.791 2.004 3.526
28 O18 O O2 N N N 0 -1.365 2.629 1.958
29 O22 O O3 N N N 0 -0.573 4.192 0.343
30 O24 O O4 N N N 0 -0.133 5.571 -1.725
31 O25 O O5 N N N 0 -2.225 6.093 -0.412
32 O26 O O6 N N N 0 -2.015 3.892 -1.835
33 O32 O O7 N N N 0 1.522 2.793 1.751
34 O34 O O8 N N N 0 3.316 4.016 2.159
35 P23 P P1 N N N 0 -1.213 4.951 -0.925
36 H012 H H1 N N N 0 -17.913 -8.027 -1.485
37 H011 H H2 N N N 0 -19.312 -7.67 -0.444
38 H013 H H3 N N N 0 -18.778 -6.48 -1.655
39 H022 H H4 N N N 0 -18.048 -5.822 0.622
40 H021 H H5 N N N 0 -17.183 -7.369 0.792
41 H032 H H6 N N N 0 -15.766 -6.79 -1.159
42 H031 H H7 N N N 0 -16.631 -5.244 -1.329
43 H041 H H8 N N N 0 -15.902 -4.586 0.948
44 H042 H H9 N N N 0 -15.037 -6.133 1.118
45 H052 H H10 N N N 0 -13.62 -5.554 -0.833
46 H051 H H11 N N N 0 -14.484 -4.008 -1.002
47 H061 H H12 N N N 0 -13.755 -3.35 1.275
48 H062 H H13 N N N 0 -12.89 -4.897 1.444
49 H071 H H14 N N N 0 -11.473 -4.318 -0.506
50 H072 H H15 N N N 0 -12.338 -2.772 -0.676
51 H081 H H16 N N N 0 -11.608 -2.114 1.601
52 H082 H H17 N N N 0 -10.744 -3.66 1.77
53 H092 H H18 N N N 0 -9.326 -3.082 -0.18
54 H091 H H19 N N N 0 -10.191 -1.536 -0.35
55 H101 H H20 N N N 0 -9.462 -0.878 1.927
56 H102 H H21 N N N 0 -8.597 -2.424 2.097
57 H112 H H22 N N N 0 -7.18 -1.846 0.146
58 H111 H H23 N N N 0 -8.044 -0.299 -0.024
59 H121 H H24 N N N 0 -7.315 0.358 2.253
60 H122 H H25 N N N 0 -6.45 -1.188 2.423
61 H131 H H26 N N N 0 -5.033 -0.61 0.472
62 H132 H H27 N N N 0 -5.898 0.937 0.302
63 H141 H H28 N N N 0 -5.168 1.595 2.579
64 H142 H H29 N N N 0 -4.304 0.048 2.749
65 H151 H H30 N N N 0 -2.886 0.627 0.798
66 H152 H H31 N N N 0 -3.751 2.173 0.628
67 H191 H H32 N N N 0 -0.227 2.432 3.695
68 H192 H H33 N N N 0 -1.091 3.978 3.526
69 H1 H H34 N N N 0 1.295 4.347 3.123
70 H211 H H35 N N N 0 -0.246 5.667 1.752
71 H212 H H36 N N N 0 1.169 5.218 0.77
72 H351 H H37 N N N 0 3.649 1.022 1.636
73 H352 H H38 N N N 0 3.473 1.809 0.049
74 H361 H H39 N N N 0 5.305 3.378 0.623
75 H362 H H40 N N N 0 5.481 2.592 2.21
76 H372 H H41 N N N 0 6.018 0.447 1.088
77 H371 H H42 N N N 0 5.842 1.234 -0.499
78 H382 H H43 N N N 0 7.674 2.803 0.075
79 H381 H H44 N N N 0 7.85 2.016 1.662
80 H392 H H45 N N N 0 8.387 -0.128 0.54
81 H391 H H46 N N N 0 8.211 0.658 -1.047
82 H402 H H47 N N N 0 10.042 2.228 -0.473
83 H401 H H48 N N N 0 10.219 1.441 1.114
84 C30 C C30 N N N 0 -4.029 3.398 -4.965
85 H3 H H50 N N N 0 -2.96 5.758 0.12
86 C27 C C27 N N N 0 -2.609 4.236 -3.089
87 C28 C C28 N N N 0 -3.288 3.003 -3.687
88 O29 O O29 N N N 0 -2.3 2.017 -3.994
89 C41 C C41 N N N 0 10.858 0.235 -0.552
90 O31 O O31 N N N 0 -4.759 2.274 -5.46
91 C42 C C42 N N N 0 12.287 0.706 -0.478
92 C43 C C32 N N N 0 13.206 -0.068 0.045
93 H6 H H54 N N N 0 -4.72 4.213 -4.748
94 H2 H H51 N N N 0 -3.35 5.021 -2.936
95 H4 H H52 N N N 0 -1.837 4.593 -3.771
96 H5 H H53 N N N 0 -3.998 2.594 -2.967
97 H7 H H55 N N N 0 -3.31 3.724 -5.716
98 H8 H H56 N N N 0 -1.635 2.312 -4.63
99 H9 H H57 N N N 0 -5.254 2.452 -6.272
100 H10 H H58 N N N 0 10.756 -0.703 -0.008
101 H11 H H59 N N N 0 10.58 0.083 -1.595
102 H12 H H60 N N N 0 12.555 1.683 -0.854
103 H13 H H61 N N N 0 14.203 0.312 0.21
104 C44 C C33 N N N 0 12.871 -1.49 0.414
105 H15 H H62 N N N 0 12.926 -1.607 1.496
106 H14 H H63 N N N 0 11.863 -1.726 0.074
107 C45 C C45 N N N 0 13.869 -2.439 -0.253
108 C46 C C46 N N N 0 13.529 -3.883 0.123
109 C47 C C47 N N N 0 14.528 -4.831 -0.544
110 C48 C C48 N N N 0 14.188 -6.275 -0.169
111 C49 C C49 N N N 0 15.186 -7.224 -0.836
112 C50 C C50 N N N 0 14.846 -8.668 -0.461
113 C51 C C51 N N N 0 15.844 -9.616 -1.127
114 H16 H H64 N N N 0 13.814 -2.322 -1.335
115 H17 H H65 N N N 0 14.877 -2.203 0.087
116 H18 H H66 N N N 0 13.584 -4.0 1.205
117 H19 H H67 N N N 0 12.521 -4.119 -0.218
118 H20 H H68 N N N 0 14.473 -4.715 -1.627
119 H21 H H69 N N N 0 15.536 -4.595 -0.204
120 H22 H H70 N N N 0 14.243 -6.392 0.913
121 H23 H H71 N N N 0 13.179 -6.511 -0.509
122 H24 H H72 N N N 0 15.131 -7.107 -1.918
123 H25 H H73 N N N 0 16.194 -6.988 -0.496
124 H26 H H74 N N N 0 14.901 -8.785 0.622
125 H27 H H75 N N N 0 13.838 -8.904 -0.801
126 H28 H H76 N N N 0 15.602 -10.645 -0.86
127 H29 H H77 N N N 0 15.789 -9.5 -2.21
128 H30 H H78 N N N 0 16.853 -9.38 -0.787