data_YFP
#
_chem_comp.id YFP
_chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H77 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-25
_chem_comp.pdbx_modified_date 2021-07-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 749.007
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YFP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LPA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YFP C01 C1 C 0 1 N N N N N N 154.018 104.949 125.019 -18.446 -7.242 -0.949 C01 YFP 1
YFP C02 C2 C 0 1 N N N N N N 154.519 106.133 125.873 -17.515 -6.607 0.086 C02 YFP 2
YFP C03 C3 C 0 1 N N N N N N 153.392 106.947 126.576 -16.300 -6.005 -0.623 C03 YFP 3
YFP C04 C4 C 0 1 N N N N N N 153.846 107.795 127.810 -15.368 -5.371 0.412 C04 YFP 4
YFP C05 C5 C 0 1 N N N N N N 153.080 107.508 129.149 -14.153 -4.769 -0.296 C05 YFP 5
YFP C06 C6 C 0 1 N N N N N N 153.828 107.955 130.455 -13.222 -4.135 0.738 C06 YFP 6
YFP C07 C7 C 0 1 N N N N N N 153.359 107.268 131.788 -12.006 -3.533 0.030 C07 YFP 7
YFP C08 C8 C 0 1 N N N N N N 154.483 106.977 132.838 -11.075 -2.899 1.064 C08 YFP 8
YFP C09 C9 C 0 1 N N N N N N 154.465 107.878 134.131 -9.860 -2.297 0.356 C09 YFP 9
YFP C10 C10 C 0 1 N N N N N N 154.056 109.384 133.917 -8.928 -1.663 1.391 C10 YFP 10
YFP C11 C11 C 0 1 N N N N N N 155.048 110.458 134.501 -7.713 -1.061 0.682 C11 YFP 11
YFP C12 C12 C 0 1 N N N N N N 155.648 110.162 135.923 -6.782 -0.426 1.717 C12 YFP 12
YFP C13 C13 C 0 1 N N N N N N 156.359 111.389 136.611 -5.567 0.175 1.008 C13 YFP 13
YFP C14 C14 C 0 1 N N N N N N 156.261 111.459 138.177 -4.635 0.810 2.043 C14 YFP 14
YFP C15 C15 C 0 1 N N N N N N 156.189 112.922 138.780 -3.420 1.411 1.334 C15 YFP 15
YFP C16 C16 C 0 1 N N N N N N 155.653 113.010 140.234 -2.502 2.036 2.353 C16 YFP 16
YFP C19 C17 C 0 1 N N N N N N 154.781 115.301 140.470 -0.530 3.210 2.995 C19 YFP 17
YFP C20 C18 C 0 1 N N R N N N 154.247 116.683 140.423 0.713 3.835 2.358 C20 YFP 18
YFP C21 C19 C 0 1 N N N N N N 153.054 117.033 141.462 0.286 4.838 1.284 C21 YFP 19
YFP C33 C20 C 0 1 N N N N N N 153.616 116.138 137.755 2.848 2.999 1.706 C33 YFP 20
YFP C35 C21 C 0 1 N N N N N N 152.531 116.011 136.656 3.751 1.961 1.092 C35 YFP 21
YFP C36 C22 C 0 1 N N N N N N 152.868 114.963 135.520 5.203 2.439 1.168 C36 YFP 22
YFP C37 C23 C 0 1 N N N N N N 152.038 115.072 134.177 6.120 1.386 0.544 C37 YFP 23
YFP C38 C24 C 0 1 N N N N N N 151.850 113.725 133.385 7.571 1.864 0.620 C38 YFP 24
YFP C39 C25 C 0 1 N N N N N N 152.880 113.443 132.228 8.489 0.811 -0.004 C39 YFP 25
YFP C40 C26 C 0 1 N N N N N N 152.337 112.608 131.004 9.940 1.289 0.072 C40 YFP 26
YFP O17 O1 O 0 1 N N N N N N 156.124 112.317 141.139 -2.791 2.004 3.526 O17 YFP 27
YFP O18 O2 O 0 1 N N N N N N 154.609 113.864 140.579 -1.365 2.629 1.958 O18 YFP 28
YFP O22 O3 O 0 1 N N N N N N 152.300 116.367 142.452 -0.573 4.192 0.343 O22 YFP 29
YFP O24 O4 O 0 1 N N N N N N 152.403 113.819 141.945 -0.133 5.571 -1.725 O24 YFP 30
YFP O25 O5 O 0 1 N N N N N N 151.923 114.540 144.339 -2.225 6.093 -0.412 O25 YFP 31
YFP O26 O6 O 0 1 N N N N N N 154.335 114.813 143.389 -2.015 3.892 -1.835 O26 YFP 32
YFP O32 O7 O 0 1 N N N N N N 153.416 116.805 138.967 1.522 2.793 1.751 O32 YFP 33
YFP O34 O8 O 0 1 N N N N N N 154.718 115.619 137.563 3.316 4.016 2.159 O34 YFP 34
YFP P23 P1 P 0 1 N N N N N N 152.668 114.816 143.047 -1.213 4.951 -0.925 P23 YFP 35
YFP H012 H1 H 0 0 N N N N N N 154.877 104.435 124.564 -17.913 -8.027 -1.485 H012 YFP 36
YFP H011 H2 H 0 0 N N N N N N 153.466 104.244 125.658 -19.312 -7.670 -0.444 H011 YFP 37
YFP H013 H3 H 0 0 N N N N N N 153.353 105.324 124.227 -18.778 -6.480 -1.655 H013 YFP 38
YFP H022 H4 H 0 0 N N N N N N 155.191 105.737 126.648 -18.048 -5.822 0.622 H022 YFP 39
YFP H021 H5 H 0 0 N N N N N N 155.078 106.817 125.217 -17.183 -7.369 0.792 H021 YFP 40
YFP H032 H6 H 0 0 N N N N N N 152.956 107.633 125.835 -15.766 -6.790 -1.159 H032 YFP 41
YFP H031 H7 H 0 0 N N N N N N 152.623 106.238 126.916 -16.631 -5.244 -1.329 H031 YFP 42
YFP H041 H8 H 0 0 N N N N N N 154.914 107.597 127.982 -15.902 -4.586 0.948 H041 YFP 43
YFP H042 H9 H 0 0 N N N N N N 153.706 108.857 127.561 -15.037 -6.133 1.118 H042 YFP 44
YFP H052 H10 H 0 0 N N N N N N 152.117 108.037 129.110 -13.620 -5.554 -0.833 H052 YFP 45
YFP H051 H11 H 0 0 N N N N N N 152.901 106.425 129.213 -14.484 -4.008 -1.002 H051 YFP 46
YFP H061 H12 H 0 0 N N N N N N 154.898 107.736 130.322 -13.755 -3.350 1.275 H061 YFP 47
YFP H062 H13 H 0 0 N N N N N N 153.688 109.040 130.568 -12.890 -4.897 1.444 H062 YFP 48
YFP H071 H14 H 0 0 N N N N N N 152.616 107.925 132.263 -11.473 -4.318 -0.506 H071 YFP 49
YFP H072 H15 H 0 0 N N N N N N 152.886 106.310 131.526 -12.338 -2.772 -0.676 H072 YFP 50
YFP H081 H16 H 0 0 N N N N N N 154.384 105.929 133.156 -11.608 -2.114 1.601 H081 YFP 51
YFP H082 H17 H 0 0 N N N N N N 155.454 107.120 132.341 -10.744 -3.660 1.770 H082 YFP 52
YFP H092 H18 H 0 0 N N N N N N 153.752 107.433 134.841 -9.326 -3.082 -0.180 H092 YFP 53
YFP H091 H19 H 0 0 N N N N N N 155.475 107.862 134.566 -10.191 -1.536 -0.350 H091 YFP 54
YFP H101 H20 H 0 0 N N N N N N 153.970 109.559 132.834 -9.462 -0.878 1.927 H101 YFP 55
YFP H102 H21 H 0 0 N N N N N N 153.076 109.537 134.392 -8.597 -2.424 2.097 H102 YFP 56
YFP H112 H22 H 0 0 N N N N N N 155.888 110.554 133.798 -7.180 -1.846 0.146 H112 YFP 57
YFP H111 H23 H 0 0 N N N N N N 154.508 111.414 134.559 -8.044 -0.299 -0.024 H111 YFP 58
YFP H121 H24 H 0 0 N N N N N N 154.828 109.831 136.578 -7.315 0.358 2.253 H121 YFP 59
YFP H122 H25 H 0 0 N N N N N N 156.386 109.353 135.821 -6.450 -1.188 2.423 H122 YFP 60
YFP H131 H26 H 0 0 N N N N N N 157.425 111.353 136.343 -5.033 -0.610 0.472 H131 YFP 61
YFP H132 H27 H 0 0 N N N N N N 155.910 112.308 136.205 -5.898 0.937 0.302 H132 YFP 62
YFP H141 H28 H 0 0 N N N N N N 155.355 110.918 138.486 -5.168 1.595 2.579 H141 YFP 63
YFP H142 H29 H 0 0 N N N N N N 157.147 110.960 138.597 -4.304 0.048 2.749 H142 YFP 64
YFP H151 H30 H 0 0 N N N N N N 157.203 113.347 138.765 -2.886 0.627 0.798 H151 YFP 65
YFP H152 H31 H 0 0 N N N N N N 155.530 113.523 138.137 -3.751 2.173 0.628 H152 YFP 66
YFP H191 H32 H 0 0 N N N N N N 155.335 115.318 139.520 -0.227 2.432 3.695 H191 YFP 67
YFP H192 H33 H 0 0 N N N N N N 155.483 115.436 141.306 -1.091 3.978 3.526 H192 YFP 68
YFP H1 H34 H 0 1 N N N N N N 155.038 117.446 140.468 1.295 4.347 3.123 H1 YFP 69
YFP H211 H35 H 0 0 N N N N N N 153.483 117.873 142.028 -0.246 5.667 1.752 H211 YFP 70
YFP H212 H36 H 0 0 N N N N N N 152.268 117.408 140.790 1.169 5.218 0.770 H212 YFP 71
YFP H351 H37 H 0 0 N N N N N N 152.401 116.997 136.186 3.649 1.022 1.636 H351 YFP 72
YFP H352 H38 H 0 0 N N N N N N 151.589 115.706 137.136 3.473 1.809 0.049 H352 YFP 73
YFP H361 H39 H 0 0 N N N N N N 152.700 113.958 135.934 5.305 3.378 0.623 H361 YFP 74
YFP H362 H40 H 0 0 N N N N N N 153.931 115.081 135.264 5.481 2.592 2.210 H362 YFP 75
YFP H372 H41 H 0 0 N N N N N N 152.554 115.784 133.516 6.018 0.447 1.088 H372 YFP 76
YFP H371 H42 H 0 0 N N N N N N 151.040 115.461 134.426 5.842 1.234 -0.499 H371 YFP 77
YFP H382 H43 H 0 0 N N N N N N 150.843 113.735 132.942 7.674 2.803 0.075 H382 YFP 78
YFP H381 H44 H 0 0 N N N N N N 151.924 112.899 134.108 7.850 2.016 1.662 H381 YFP 79
YFP H392 H45 H 0 0 N N N N N N 153.729 112.893 132.660 8.387 -0.128 0.540 H392 YFP 80
YFP H391 H46 H 0 0 N N N N N N 153.229 114.413 131.845 8.211 0.658 -1.047 H391 YFP 81
YFP H402 H47 H 0 0 N N N N N N 152.678 113.303 130.223 10.042 2.228 -0.473 H402 YFP 82
YFP H401 H48 H 0 0 N N N N N N 153.054 111.779 131.096 10.219 1.441 1.114 H401 YFP 83
YFP H3 H50 H 0 1 N N N N N N 151.394 113.758 144.239 -2.960 5.758 0.120 H3 YFP 84
YFP C27 C27 C 0 1 N N N N N N ? ? ? -2.609 4.236 -3.089 C27 YFP 85
YFP C28 C28 C 0 1 N N N N N N ? ? ? -3.288 3.003 -3.687 C28 YFP 86
YFP C30 C30 C 0 1 N N N N N N ? ? ? -4.029 3.398 -4.965 C30 YFP 87
YFP O29 O29 O 0 1 N N N N N N ? ? ? -2.300 2.017 -3.994 O29 YFP 88
YFP O31 O31 O 0 1 N N N N N N ? ? ? -4.759 2.274 -5.460 O31 YFP 89
YFP C41 C41 C 0 1 N N N N N N ? ? ? 10.858 0.235 -0.552 C41 YFP 90
YFP C42 C42 C 0 1 N N N N N N ? ? ? 12.287 0.706 -0.478 C42 YFP 91
YFP C43 C32 C 0 1 N N N N N N ? ? ? 13.206 -0.068 0.045 C43 YFP 92
YFP H2 H51 H 0 1 N N N N N N ? ? ? -3.350 5.021 -2.936 H2 YFP 93
YFP H4 H52 H 0 1 N N N N N N ? ? ? -1.837 4.593 -3.771 H4 YFP 94
YFP H5 H53 H 0 1 N N N N N N ? ? ? -3.998 2.594 -2.967 H5 YFP 95
YFP H6 H54 H 0 1 N N N N N N ? ? ? -4.720 4.213 -4.748 H6 YFP 96
YFP H7 H55 H 0 1 N N N N N N ? ? ? -3.310 3.724 -5.716 H7 YFP 97
YFP H8 H56 H 0 1 N N N N N N ? ? ? -1.635 2.312 -4.630 H8 YFP 98
YFP H9 H57 H 0 1 N N N N N N ? ? ? -5.254 2.452 -6.272 H9 YFP 99
YFP H10 H58 H 0 1 N N N N N N ? ? ? 10.756 -0.703 -0.008 H10 YFP 100
YFP H11 H59 H 0 1 N N N N N N ? ? ? 10.580 0.083 -1.595 H11 YFP 101
YFP H12 H60 H 0 1 N N N N N N ? ? ? 12.555 1.683 -0.854 H12 YFP 102
YFP H13 H61 H 0 1 N N N N N N ? ? ? 14.203 0.312 0.210 H13 YFP 103
YFP C44 C33 C 0 1 N N N N N N ? ? ? 12.871 -1.490 0.414 C44 YFP 104
YFP H15 H62 H 0 1 N N N N N N ? ? ? 12.926 -1.607 1.496 H15 YFP 105
YFP H14 H63 H 0 1 N N N N N N ? ? ? 11.863 -1.726 0.074 H14 YFP 106
YFP C45 C45 C 0 1 N N N N N N ? ? ? 13.869 -2.439 -0.253 C45 YFP 107
YFP C46 C46 C 0 1 N N N N N N ? ? ? 13.529 -3.883 0.123 C46 YFP 108
YFP C47 C47 C 0 1 N N N N N N ? ? ? 14.528 -4.831 -0.544 C47 YFP 109
YFP C48 C48 C 0 1 N N N N N N ? ? ? 14.188 -6.275 -0.169 C48 YFP 110
YFP C49 C49 C 0 1 N N N N N N ? ? ? 15.186 -7.224 -0.836 C49 YFP 111
YFP C50 C50 C 0 1 N N N N N N ? ? ? 14.846 -8.668 -0.461 C50 YFP 112
YFP C51 C51 C 0 1 N N N N N N ? ? ? 15.844 -9.616 -1.127 C51 YFP 113
YFP H16 H64 H 0 1 N N N N N N ? ? ? 13.814 -2.322 -1.335 H16 YFP 114
YFP H17 H65 H 0 1 N N N N N N ? ? ? 14.877 -2.203 0.087 H17 YFP 115
YFP H18 H66 H 0 1 N N N N N N ? ? ? 13.584 -4.000 1.205 H18 YFP 116
YFP H19 H67 H 0 1 N N N N N N ? ? ? 12.521 -4.119 -0.218 H19 YFP 117
YFP H20 H68 H 0 1 N N N N N N ? ? ? 14.473 -4.715 -1.627 H20 YFP 118
YFP H21 H69 H 0 1 N N N N N N ? ? ? 15.536 -4.595 -0.204 H21 YFP 119
YFP H22 H70 H 0 1 N N N N N N ? ? ? 14.243 -6.392 0.913 H22 YFP 120
YFP H23 H71 H 0 1 N N N N N N ? ? ? 13.179 -6.511 -0.509 H23 YFP 121
YFP H24 H72 H 0 1 N N N N N N ? ? ? 15.131 -7.107 -1.918 H24 YFP 122
YFP H25 H73 H 0 1 N N N N N N ? ? ? 16.194 -6.988 -0.496 H25 YFP 123
YFP H26 H74 H 0 1 N N N N N N ? ? ? 14.901 -8.785 0.622 H26 YFP 124
YFP H27 H75 H 0 1 N N N N N N ? ? ? 13.838 -8.904 -0.801 H27 YFP 125
YFP H28 H76 H 0 1 N N N N N N ? ? ? 15.602 -10.645 -0.860 H28 YFP 126
YFP H29 H77 H 0 1 N N N N N N ? ? ? 15.789 -9.500 -2.210 H29 YFP 127
YFP H30 H78 H 0 1 N N N N N N ? ? ? 16.853 -9.380 -0.787 H30 YFP 128
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YFP C01 C02 SING N N 1
YFP C02 C03 SING N N 2
YFP C03 C04 SING N N 3
YFP C04 C05 SING N N 4
YFP C05 C06 SING N N 5
YFP C06 C07 SING N N 6
YFP C40 C39 SING N N 7
YFP C07 C08 SING N N 8
YFP C39 C38 SING N N 9
YFP C08 C09 SING N N 10
YFP C38 C37 SING N N 11
YFP C10 C09 SING N N 12
YFP C10 C11 SING N N 13
YFP C37 C36 SING N N 14
YFP C11 C12 SING N N 15
YFP C36 C35 SING N N 16
YFP C12 C13 SING N N 17
YFP C13 C14 SING N N 18
YFP C35 C33 SING N N 19
YFP O34 C33 DOUB N N 20
YFP C33 O32 SING N N 21
YFP C14 C15 SING N N 22
YFP C15 C16 SING N N 23
YFP O32 C20 SING N N 24
YFP C16 O18 SING N N 25
YFP C16 O17 DOUB N N 26
YFP C20 C19 SING N N 27
YFP C20 C21 SING N N 28
YFP C19 O18 SING N N 29
YFP C21 O22 SING N N 30
YFP O24 P23 DOUB N N 31
YFP O22 P23 SING N N 32
YFP P23 O26 SING N N 33
YFP P23 O25 SING N N 34
YFP C01 H012 SING N N 35
YFP C01 H011 SING N N 36
YFP C01 H013 SING N N 37
YFP C02 H022 SING N N 38
YFP C02 H021 SING N N 39
YFP C03 H032 SING N N 40
YFP C03 H031 SING N N 41
YFP C04 H041 SING N N 42
YFP C04 H042 SING N N 43
YFP C05 H052 SING N N 44
YFP C05 H051 SING N N 45
YFP C06 H061 SING N N 46
YFP C06 H062 SING N N 47
YFP C07 H071 SING N N 48
YFP C07 H072 SING N N 49
YFP C08 H081 SING N N 50
YFP C08 H082 SING N N 51
YFP C09 H092 SING N N 52
YFP C09 H091 SING N N 53
YFP C10 H101 SING N N 54
YFP C10 H102 SING N N 55
YFP C11 H112 SING N N 56
YFP C11 H111 SING N N 57
YFP C12 H121 SING N N 58
YFP C12 H122 SING N N 59
YFP C13 H131 SING N N 60
YFP C13 H132 SING N N 61
YFP C14 H141 SING N N 62
YFP C14 H142 SING N N 63
YFP C15 H151 SING N N 64
YFP C15 H152 SING N N 65
YFP C19 H191 SING N N 66
YFP C19 H192 SING N N 67
YFP C20 H1 SING N N 68
YFP C21 H211 SING N N 69
YFP C21 H212 SING N N 70
YFP C35 H351 SING N N 71
YFP C35 H352 SING N N 72
YFP C36 H361 SING N N 73
YFP C36 H362 SING N N 74
YFP C37 H372 SING N N 75
YFP C37 H371 SING N N 76
YFP C38 H382 SING N N 77
YFP C38 H381 SING N N 78
YFP C39 H392 SING N N 79
YFP C39 H391 SING N N 80
YFP C40 H402 SING N N 81
YFP C40 H401 SING N N 82
YFP O25 H3 SING N N 83
YFP O26 C27 SING N N 84
YFP C27 C28 SING N N 85
YFP C28 C30 SING N N 86
YFP C28 O29 SING N N 87
YFP C30 O31 SING N N 88
YFP C40 C41 SING N N 89
YFP C41 C42 SING N N 90
YFP C42 C43 DOUB N N 91
YFP C27 H2 SING N N 92
YFP C27 H4 SING N N 93
YFP C28 H5 SING N N 94
YFP C30 H6 SING N N 95
YFP C30 H7 SING N N 96
YFP O29 H8 SING N N 97
YFP O31 H9 SING N N 98
YFP C41 H10 SING N N 99
YFP C41 H11 SING N N 100
YFP C42 H12 SING N N 101
YFP C43 H13 SING N N 102
YFP C43 C44 SING N N 103
YFP C44 H15 SING N N 104
YFP C44 H14 SING N N 105
YFP C44 C45 SING N N 106
YFP C45 C46 SING N N 107
YFP C46 C47 SING N N 108
YFP C47 C48 SING N N 109
YFP C48 C49 SING N N 110
YFP C49 C50 SING N N 111
YFP C50 C51 SING N N 112
YFP C45 H16 SING N N 113
YFP C45 H17 SING N N 114
YFP C46 H18 SING N N 115
YFP C46 H19 SING N N 116
YFP C47 H20 SING N N 117
YFP C47 H21 SING N N 118
YFP C48 H22 SING N N 119
YFP C48 H23 SING N N 120
YFP C49 H24 SING N N 121
YFP C49 H25 SING N N 122
YFP C50 H26 SING N N 123
YFP C50 H27 SING N N 124
YFP C51 H28 SING N N 125
YFP C51 H29 SING N N 126
YFP C51 H30 SING N N 127
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YFP SMILES ACDLabs 12.01 O=C(OC(COP(O)(=O)OCC(O)CO)COC(=O)CCCCCCCCCCCCCCC)CCCCCCC\C=C\CCCCCCCC
YFP InChI InChI 1.03 InChI=1S/C40H77O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,37-38,41-42H,3-16,19-36H2,1-2H3,(H,45,46)/t37?,38-/m1/s1
YFP InChIKey InChI 1.03 PAZGBAOHGQRCBP-YWIOZPJLSA-N
YFP SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OCC(O)CO)OC(=O)CCCCCCCC=CCCCCCCCC
YFP SMILES CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCC(O)CO)OC(=O)CCCCCCCC=CCCCCCCCC
YFP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCC(CO)O)OC(=O)CCCCCCCC=CCCCCCCCC
YFP SMILES "OpenEye OEToolkits" 2.0.7 CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(CO)O)OC(=O)CCCCCCCC=CCCCCCCCC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YFP "SYSTEMATIC NAME" ACDLabs 12.01 "(19R,22R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacosan-19-yl octadec-9-enoate"
YFP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-1-[2,3-bis(oxidanyl)propoxy-oxidanyl-phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] octadec-9-enoate"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id YFP
_pdbx_chem_comp_synonyms.name
"(19R,22R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacosan-19-yl octadec-9-enoate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YFP 'Create component' 2021-02-25 RCSB
YFP 'Other modification' 2021-02-26 RCSB
YFP 'Initial release' 2021-07-28 RCSB
#
_pdbe_chem_comp_synonyms.comp_id YFP
_pdbe_chem_comp_synonyms.name
'(19R,22R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacosan-19-yl octadec-9-enoate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YFP C01 C 25.889 11.857 1
YFP C02 C 24.590 11.107 2
YFP C03 C 24.590 9.607 3
YFP C04 C 23.291 8.857 4
YFP C05 C 23.291 7.357 5
YFP C06 C 21.992 6.607 6
YFP C07 C 21.992 5.107 7
YFP C08 C 20.693 4.357 8
YFP C09 C 20.693 2.857 9
YFP C10 C 19.394 2.107 10
YFP C11 C 19.394 0.608 11
YFP C12 C 18.095 -0.142 12
YFP C13 C 18.095 -1.643 13
YFP C14 C 16.796 -2.393 14
YFP C15 C 16.796 -3.893 15
YFP C16 C 15.497 -4.643 16
YFP C19 C 14.198 -6.893 17
YFP C20 C 14.198 -8.393 18
YFP C21 C 12.899 -9.143 19
YFP C33 C 16.796 -8.393 20
YFP C35 C 18.095 -9.143 21
YFP C36 C 19.394 -8.393 22
YFP C37 C 20.693 -9.143 23
YFP C38 C 21.992 -8.393 24
YFP C39 C 23.291 -9.143 25
YFP C40 C 24.590 -8.393 26
YFP O17 O 14.198 -3.893 27
YFP O18 O 15.497 -6.143 28
YFP O22 O 11.600 -8.393 29
YFP O24 O 9.551 -7.843 30
YFP O25 O 11.051 -10.441 31
YFP O26 O 9.002 -9.893 32
YFP O32 O 15.497 -9.143 33
YFP O34 O 16.796 -6.893 34
YFP P23 P 10.301 -9.143 35
YFP C27 C 7.702 -9.143 36
YFP C28 C 6.404 -9.893 37
YFP C30 C 5.104 -9.143 38
YFP O29 O 6.404 -11.393 39
YFP O31 O 3.805 -9.893 40
YFP C41 C 25.889 -9.143 41
YFP C42 C 27.188 -8.393 42
YFP C43 C 28.487 -9.143 43
YFP C44 C 29.786 -8.393 44
YFP C45 C 31.085 -9.143 45
YFP C46 C 32.384 -8.393 46
YFP C47 C 33.683 -9.143 47
YFP C48 C 34.982 -8.393 48
YFP C49 C 36.281 -9.143 49
YFP C50 C 37.580 -8.393 50
YFP C51 C 38.879 -9.143 51
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YFP C01 C02 SINGLE NONE 1
YFP C02 C03 SINGLE NONE 2
YFP C03 C04 SINGLE NONE 3
YFP C04 C05 SINGLE NONE 4
YFP C05 C06 SINGLE NONE 5
YFP C06 C07 SINGLE NONE 6
YFP C40 C39 SINGLE NONE 7
YFP C07 C08 SINGLE NONE 8
YFP C39 C38 SINGLE NONE 9
YFP C08 C09 SINGLE NONE 10
YFP C38 C37 SINGLE NONE 11
YFP C10 C09 SINGLE NONE 12
YFP C10 C11 SINGLE NONE 13
YFP C37 C36 SINGLE NONE 14
YFP C11 C12 SINGLE NONE 15
YFP C36 C35 SINGLE NONE 16
YFP C12 C13 SINGLE NONE 17
YFP C13 C14 SINGLE NONE 18
YFP C35 C33 SINGLE NONE 19
YFP O34 C33 DOUBLE NONE 20
YFP C33 O32 SINGLE NONE 21
YFP C14 C15 SINGLE NONE 22
YFP C15 C16 SINGLE NONE 23
YFP O32 C20 SINGLE NONE 24
YFP C16 O18 SINGLE NONE 25
YFP C16 O17 DOUBLE NONE 26
YFP C20 C19 SINGLE BEGINWEDGE 27
YFP C20 C21 SINGLE NONE 28
YFP C19 O18 SINGLE NONE 29
YFP C21 O22 SINGLE NONE 30
YFP O24 P23 DOUBLE NONE 31
YFP O22 P23 SINGLE NONE 32
YFP P23 O26 SINGLE NONE 33
YFP P23 O25 SINGLE BEGINWEDGE 34
YFP O26 C27 SINGLE NONE 35
YFP C27 C28 SINGLE NONE 36
YFP C28 C30 SINGLE NONE 37
YFP C28 O29 SINGLE BEGINDASH 38
YFP C30 O31 SINGLE NONE 39
YFP C40 C41 SINGLE NONE 40
YFP C41 C42 SINGLE ENDUPRIGHT 41
YFP C42 C43 DOUBLE NONE 42
YFP C43 C44 SINGLE ENDDOWNRIGHT 43
YFP C44 C45 SINGLE NONE 44
YFP C45 C46 SINGLE NONE 45
YFP C46 C47 SINGLE NONE 46
YFP C47 C48 SINGLE NONE 47
YFP C48 C49 SINGLE NONE 48
YFP C49 C50 SINGLE NONE 49
YFP C50 C51 SINGLE NONE 50
#
_pdbe_chem_comp_substructure.comp_id YFP
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YFP O22 F1 1
YFP P23 F1 1
YFP O24 F1 1
YFP O26 F1 1
YFP O25 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YFP
_pdbe_chem_comp_rdkit_properties.exactmw 748.525
_pdbe_chem_comp_rdkit_properties.amw 749.020
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 44
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 51
_pdbe_chem_comp_rdkit_properties.NumAtoms 128
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.900
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 419.435
_pdbe_chem_comp_rdkit_properties.tpsa 148.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 10.447
_pdbe_chem_comp_rdkit_properties.CrippenMR 205.425
_pdbe_chem_comp_rdkit_properties.chi0v 25.424
_pdbe_chem_comp_rdkit_properties.chi1v 13.232
_pdbe_chem_comp_rdkit_properties.chi2v 3.608
_pdbe_chem_comp_rdkit_properties.chi3v 3.608
_pdbe_chem_comp_rdkit_properties.chi4v 1.874
_pdbe_chem_comp_rdkit_properties.chi0n 101.530
_pdbe_chem_comp_rdkit_properties.chi1n 49.996
_pdbe_chem_comp_rdkit_properties.chi2n 2.978
_pdbe_chem_comp_rdkit_properties.chi3n 2.978
_pdbe_chem_comp_rdkit_properties.chi4n 1.448
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.290
_pdbe_chem_comp_rdkit_properties.kappa1 7.463
_pdbe_chem_comp_rdkit_properties.kappa2 37.043
_pdbe_chem_comp_rdkit_properties.kappa3 36.841
_pdbe_chem_comp_rdkit_properties.Phi 5.421
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YFP C01 10.445 0.845 -3.770 ETKDGv3 1
YFP C02 9.307 1.609 -4.443 ETKDGv3 2
YFP C03 7.984 1.529 -3.663 ETKDGv3 3
YFP C04 8.022 2.258 -2.302 ETKDGv3 4
YFP C05 8.187 1.284 -1.122 ETKDGv3 5
YFP C06 8.183 2.012 0.240 ETKDGv3 6
YFP C07 6.867 1.850 1.018 ETKDGv3 7
YFP C08 5.685 2.557 0.342 ETKDGv3 8
YFP C09 4.424 2.469 1.214 ETKDGv3 9
YFP C10 3.211 3.168 0.575 ETKDGv3 10
YFP C11 2.623 2.444 -0.653 ETKDGv3 11
YFP C12 2.066 1.042 -0.328 ETKDGv3 12
YFP C13 2.994 -0.087 -0.817 ETKDGv3 13
YFP C14 2.740 -1.413 -0.089 ETKDGv3 14
YFP C15 1.392 -2.053 -0.452 ETKDGv3 15
YFP C16 1.117 -3.232 0.429 ETKDGv3 16
YFP C19 -0.290 -4.159 2.252 ETKDGv3 17
YFP C20 0.348 -3.545 3.506 ETKDGv3 18
YFP C21 0.272 -4.507 4.696 ETKDGv3 19
YFP C33 0.102 -1.067 3.436 ETKDGv3 20
YFP C35 -0.866 0.070 3.395 ETKDGv3 21
YFP C36 -1.320 0.313 1.953 ETKDGv3 22
YFP C37 -2.329 1.467 1.872 ETKDGv3 23
YFP C38 -2.618 1.899 0.423 ETKDGv3 24
YFP C39 -3.196 0.793 -0.483 ETKDGv3 25
YFP C40 -4.491 0.134 0.033 ETKDGv3 26
YFP O17 1.968 -4.158 0.527 ETKDGv3 27
YFP O18 -0.090 -3.295 1.135 ETKDGv3 28
YFP O22 0.838 -3.901 5.843 ETKDGv3 29
YFP O24 2.336 -5.982 6.443 ETKDGv3 30
YFP O25 3.096 -3.697 7.435 ETKDGv3 31
YFP O26 3.386 -4.303 4.725 ETKDGv3 32
YFP O32 -0.336 -2.334 3.833 ETKDGv3 33
YFP O34 1.294 -0.881 3.069 ETKDGv3 34
YFP P23 2.414 -4.508 6.114 ETKDGv3 35
YFP H012 10.131 -0.194 -3.534 ETKDGv3 36
YFP H011 10.763 1.361 -2.841 ETKDGv3 37
YFP H013 11.317 0.804 -4.455 ETKDGv3 38
YFP H022 9.143 1.174 -5.452 ETKDGv3 39
YFP H021 9.603 2.671 -4.581 ETKDGv3 40
YFP H032 7.203 2.011 -4.291 ETKDGv3 41
YFP H031 7.677 0.467 -3.545 ETKDGv3 42
YFP H041 7.071 2.817 -2.178 ETKDGv3 43
YFP H042 8.840 3.012 -2.285 ETKDGv3 44
YFP H052 9.153 0.748 -1.231 ETKDGv3 45
YFP H051 7.387 0.512 -1.155 ETKDGv3 46
YFP H061 8.993 1.579 0.867 ETKDGv3 47
YFP H062 8.422 3.092 0.124 ETKDGv3 48
YFP H071 6.639 0.769 1.141 ETKDGv3 49
YFP H072 7.013 2.279 2.034 ETKDGv3 50
YFP H081 5.940 3.626 0.170 ETKDGv3 51
YFP H082 5.489 2.077 -0.636 ETKDGv3 52
YFP H092 4.633 2.970 2.185 ETKDGv3 53
YFP H091 4.186 1.409 1.443 ETKDGv3 54
YFP H101 2.414 3.264 1.344 ETKDGv3 55
YFP H102 3.497 4.201 0.280 ETKDGv3 56
YFP H112 3.364 2.406 -1.480 ETKDGv3 57
YFP H111 1.784 3.069 -1.028 ETKDGv3 58
YFP H121 1.081 0.927 -0.831 ETKDGv3 59
YFP H122 1.882 0.948 0.764 ETKDGv3 60
YFP H131 2.873 -0.225 -1.914 ETKDGv3 61
YFP H132 4.053 0.189 -0.634 ETKDGv3 62
YFP H141 3.556 -2.120 -0.356 ETKDGv3 63
YFP H142 2.800 -1.241 1.005 ETKDGv3 64
YFP H151 1.405 -2.382 -1.513 ETKDGv3 65
YFP H152 0.570 -1.318 -0.323 ETKDGv3 66
YFP H191 -1.383 -4.276 2.417 ETKDGv3 67
YFP H192 0.133 -5.166 2.042 ETKDGv3 68
YFP H1 1.417 -3.350 3.293 ETKDGv3 69
YFP H211 0.722 -5.491 4.428 ETKDGv3 70
YFP H212 -0.798 -4.711 4.917 ETKDGv3 71
YFP H351 -0.375 0.982 3.799 ETKDGv3 72
YFP H352 -1.744 -0.170 4.033 ETKDGv3 73
YFP H361 -0.436 0.556 1.327 ETKDGv3 74
YFP H362 -1.786 -0.617 1.561 ETKDGv3 75
YFP H372 -3.271 1.185 2.387 ETKDGv3 76
YFP H371 -1.915 2.349 2.408 ETKDGv3 77
YFP H382 -1.673 2.264 -0.034 ETKDGv3 78
YFP H381 -3.312 2.766 0.438 ETKDGv3 79
YFP H392 -2.429 0.003 -0.630 ETKDGv3 80
YFP H391 -3.384 1.227 -1.489 ETKDGv3 81
YFP H402 -4.793 -0.648 -0.695 ETKDGv3 82
YFP H401 -4.289 -0.393 0.989 ETKDGv3 83
YFP H3 2.424 -3.781 8.157 ETKDGv3 84
YFP C27 3.842 -2.969 4.683 ETKDGv3 85
YFP C28 4.493 -2.710 3.320 ETKDGv3 86
YFP C30 4.901 -1.238 3.158 ETKDGv3 87
YFP O29 5.616 -3.540 3.174 ETKDGv3 88
YFP O31 5.908 -0.904 4.074 ETKDGv3 89
YFP C41 -5.662 1.110 0.238 ETKDGv3 90
YFP C42 -6.043 1.816 -1.040 ETKDGv3 91
YFP C43 -6.892 1.327 -1.963 ETKDGv3 92
YFP H2 4.597 -2.801 5.484 ETKDGv3 93
YFP H4 3.000 -2.251 4.814 ETKDGv3 94
YFP H5 3.744 -2.953 2.532 ETKDGv3 95
YFP H6 5.272 -1.080 2.121 ETKDGv3 96
YFP H7 4.017 -0.580 3.312 ETKDGv3 97
YFP H8 5.832 -3.562 2.205 ETKDGv3 98
YFP H9 6.129 0.048 3.903 ETKDGv3 99
YFP H10 -5.388 1.869 1.000 ETKDGv3 100
YFP H11 -6.528 0.560 0.658 ETKDGv3 101
YFP H12 -5.562 2.768 -1.245 ETKDGv3 102
YFP H13 -7.048 1.908 -2.868 ETKDGv3 103
YFP C44 -7.674 0.045 -1.819 ETKDGv3 104
YFP H15 -7.064 -0.730 -1.309 ETKDGv3 105
YFP H14 -7.890 -0.353 -2.830 ETKDGv3 106
YFP C45 -8.986 0.256 -1.044 ETKDGv3 107
YFP C46 -10.020 1.122 -1.800 ETKDGv3 108
YFP C47 -11.145 0.307 -2.465 ETKDGv3 109
YFP C48 -10.696 -0.594 -3.631 ETKDGv3 110
YFP C49 -10.094 0.155 -4.835 ETKDGv3 111
YFP C50 -11.100 1.089 -5.522 ETKDGv3 112
YFP C51 -10.521 1.668 -6.810 ETKDGv3 113
YFP H16 -9.420 -0.737 -0.796 ETKDGv3 114
YFP H17 -8.754 0.743 -0.073 ETKDGv3 115
YFP H18 -10.505 1.792 -1.058 ETKDGv3 116
YFP H19 -9.537 1.796 -2.537 ETKDGv3 117
YFP H20 -11.626 -0.334 -1.693 ETKDGv3 118
YFP H21 -11.935 1.004 -2.817 ETKDGv3 119
YFP H22 -9.962 -1.339 -3.260 ETKDGv3 120
YFP H23 -11.577 -1.175 -3.981 ETKDGv3 121
YFP H24 -9.755 -0.609 -5.568 ETKDGv3 122
YFP H25 -9.195 0.730 -4.530 ETKDGv3 123
YFP H26 -12.030 0.531 -5.765 ETKDGv3 124
YFP H27 -11.356 1.933 -4.847 ETKDGv3 125
YFP H28 -10.286 0.853 -7.528 ETKDGv3 126
YFP H29 -11.262 2.349 -7.278 ETKDGv3 127
YFP H30 -9.596 2.244 -6.593 ETKDGv3 128
#