Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y33    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O31 C31 O C doub 1.22 N N
2 C31 O32 C O sing 1.35 N N
3 C31 C3 C C sing 1.41 N N
4 C7 O7 C O doub 1.21 N N
5 C7 C6 C C sing 1.51 N N
6 N4 C3 N C sing 1.41 N N
7 N4 C5 N C sing 1.47 N N
8 C3 C2 C C doub 1.35 N N
9 C26 C5 C C sing 1.53 N N
10 C5 C6 C C sing 1.53 N N
11 C5 C1 C C sing 1.54 N N
12 C6 C61 C C sing 1.53 N N
13 C62 C61 C C sing 1.53 N N
14 C61 O62 C O sing 1.43 N N
15 C2 C1 C C sing 1.51 N N
16 C2 S21 C S sing 1.76 N N
17 N3A C2A N C sing 1.48 N N
18 N3A C5A N C sing 1.47 N N
19 O6A C6A O C doub 1.21 N N
20 C2A C1A C C sing 1.55 N N
21 S21 C1A S C sing 1.81 N N
22 C6A C5A C C sing 1.51 N N
23 C6A N7A C N sing 1.35 N N
24 C5A C4A C C sing 1.54 N N
25 C1A C4A C C sing 1.55 N N
26 C8A N7A C N sing 1.47 N N
27 N7A C9A N C sing 1.46 N N
28 C1 H1 C H sing 1.09 N N
29 C1 H2 C H sing 1.09 N N
30 N4 H5 N H sing 0.97 N N
31 C6 H7 C H sing 1.09 N N
32 C26 H9 C H sing 1.09 N N
33 C26 H10 C H sing 1.09 N N
34 C26 H11 C H sing 1.09 N N
35 C61 H12 C H sing 1.09 N N
36 C62 H13 C H sing 1.09 N N
37 C62 H14 C H sing 1.09 N N
38 C62 H15 C H sing 1.09 N N
39 O32 H16 O H sing 0.97 N N
40 O62 H17 O H sing 0.97 N N
41 C1A H18 C H sing 1.09 N N
42 C2A H19 C H sing 1.09 N N
43 C2A H20 C H sing 1.09 N N
44 C4A H21 C H sing 1.09 N N
45 C4A H22 C H sing 1.09 N N
46 C5A H23 C H sing 1.09 N N
47 C8A H24 C H sing 1.09 N N
48 C8A H25 C H sing 1.09 N N
49 C8A H26 C H sing 1.09 N N
50 C9A H27 C H sing 1.09 N N
51 C9A H28 C H sing 1.09 N N
52 C9A H29 C H sing 1.09 N N
53 N3A H30 N H sing 1.01 N N
54 C7 O7A C O sing 1.34 N N
55 O7A H8 O H sing 0.97 N N