Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y33

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.651 0.763 -0.142
2 C2 C C2 N N N 0 -0.849 -0.462 0.234
3 C3 C C3 N N N 0 -1.475 -1.555 -0.24
4 N4 N N1 N N N 0 -2.661 -1.246 -0.927
5 C5 C C4 R N N 0 -2.859 0.212 -0.92
6 C6 C C5 S N N 0 -4.163 0.57 -0.204
7 C7 C C6 N N N 0 -4.416 2.05 -0.329
8 C26 C C7 N N N 0 -2.872 0.756 -2.351
9 C31 C C8 N N N 0 -0.992 -2.873 -0.065
10 C61 C C9 R N N 0 -4.051 0.195 1.276
11 C62 C C10 N N N 0 -5.283 0.705 2.026
12 O31 O O1 N N N 0 -0.01 -3.074 0.625
13 O32 O O2 N N N 0 -1.619 -3.907 -0.665
14 O62 O O3 N N N 0 -3.971 -1.226 1.402
15 O7 O O4 N N N 0 -3.487 2.823 -0.337
16 C1A C C11 S N N 0 1.72 0.449 -0.009
17 C2A C C12 N N N 0 2.134 -0.444 -1.205
18 C4A C C13 N N N 0 3.095 0.768 0.634
19 C5A C C14 S N N 0 4.032 0.884 -0.587
20 C6A C C15 N N N 0 5.375 0.282 -0.262
21 C8A C C16 N N N 0 7.582 0.404 0.764
22 C9A C C17 N N N 0 5.951 2.343 0.903
23 N3A N N2 N N N 0 3.401 0.141 -1.693
24 N7A N N3 N N N 0 6.276 0.989 0.448
25 O6A O O5 N N N 0 5.644 -0.839 -0.638
26 S21 S S1 N N N 0 0.66 -0.459 1.143
27 H1 H H1 N N N 0 -1.983 1.289 0.753
28 H2 H H2 N N N 0 -1.06 1.425 -0.775
29 H5 H H5 N N N 0 -3.254 -1.891 -1.342
30 H7 H H7 N N N 0 -4.989 0.02 -0.656
31 H8 H H8 N N Y 0 -5.785 3.467 -0.51
32 H9 H H9 N N N 0 -3.684 0.289 -2.909
33 H10 H H10 N N N 0 -3.021 1.835 -2.328
34 H11 H H11 N N N 0 -1.922 0.53 -2.834
35 H12 H H12 N N N 0 -3.155 0.648 1.698
36 H13 H H13 N N N 0 -6.179 0.251 1.603
37 H14 H H14 N N N 0 -5.203 0.438 3.079
38 H15 H H15 N N N 0 -5.344 1.789 1.929
39 H16 H H16 N N N 0 -1.216 -4.768 -0.487
40 H17 H H17 N N N 0 -3.144 -1.605 1.073
41 H18 H H18 N N N 0 1.23 1.359 -0.353
42 H19 H H19 N N N 0 2.293 -1.471 -0.874
43 H20 H H20 N N N 0 1.373 -0.411 -1.985
44 H21 H H21 N N N 0 3.056 1.711 1.18
45 H22 H H22 N N N 0 3.412 -0.043 1.291
46 H23 H H23 N N N 0 4.153 1.931 -0.864
47 H24 H H24 N N N 0 8.289 0.645 -0.029
48 H25 H H25 N N N 0 7.943 0.811 1.709
49 H26 H H26 N N N 0 7.484 -0.678 0.848
50 H27 H H27 N N N 0 5.075 2.308 1.551
51 H28 H H28 N N N 0 6.796 2.754 1.456
52 H29 H H29 N N N 0 5.74 2.976 0.041
53 H30 H H30 N N N 0 4.018 -0.575 -2.047
54 O7A O O7A N N Y 0 -5.673 2.51 -0.431