data_Y33
#
_chem_comp.id Y33
_chem_comp.name
'(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C17 H27 N3 O6 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-01-03
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 401.478
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y33
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FAJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y33 C1 C1 C 0 1 N N N N N N 3.265 -15.980 3.654 -1.651 0.763 -0.142 C1 Y33 1
Y33 C2 C2 C 0 1 N N N N N N 4.671 -15.995 3.044 -0.849 -0.462 0.234 C2 Y33 2
Y33 C3 C3 C 0 1 N N N N N N 4.500 -16.818 1.797 -1.475 -1.555 -0.240 C3 Y33 3
Y33 N4 N1 N 0 1 N N N N N N 3.283 -16.855 1.449 -2.661 -1.246 -0.927 N4 Y33 4
Y33 C5 C4 C 0 1 N N R N N N 2.422 -16.133 2.382 -2.859 0.212 -0.920 C5 Y33 5
Y33 C6 C5 C 0 1 N N S N N N 1.177 -16.980 2.612 -4.163 0.570 -0.204 C6 Y33 6
Y33 C7 C6 C 0 1 N N N N N N 0.944 -17.850 1.394 -4.416 2.050 -0.329 C7 Y33 7
Y33 C26 C7 C 0 1 N N N N N N 2.085 -14.742 1.849 -2.872 0.756 -2.351 C26 Y33 8
Y33 C31 C8 C 0 1 N N N N N N 5.522 -17.375 0.918 -0.992 -2.873 -0.065 C31 Y33 9
Y33 C61 C9 C 0 1 N N R N N N -0.061 -16.150 2.908 -4.051 0.195 1.276 C61 Y33 10
Y33 C62 C10 C 0 1 N N N N N N -1.285 -17.060 2.906 -5.283 0.705 2.026 C62 Y33 11
Y33 O31 O1 O 0 1 N N N N N N 5.302 -17.322 -0.324 -0.010 -3.074 0.625 O31 Y33 12
Y33 O32 O2 O 0 1 N N N N N N 6.561 -17.845 1.406 -1.619 -3.907 -0.665 O32 Y33 13
Y33 O62 O3 O 0 1 N N N N N N 0.126 -15.525 4.182 -3.971 -1.226 1.402 O62 Y33 14
Y33 O7 O4 O 0 1 N N N N N N 1.186 -19.055 1.442 -3.487 2.823 -0.337 O7 Y33 15
Y33 C1A C11 C 0 1 N N S N N N 6.358 -14.855 4.781 1.720 0.449 -0.009 C1A Y33 16
Y33 C2A C12 C 0 1 N N N N N N 6.613 -13.963 3.582 2.134 -0.444 -1.205 C2A Y33 17
Y33 C4A C13 C 0 1 N N N N N N 7.685 -14.860 5.504 3.095 0.768 0.634 C4A Y33 18
Y33 C5A C14 C 0 1 N N S N N N 8.724 -14.461 4.453 4.032 0.884 -0.587 C5A Y33 19
Y33 C6A C15 C 0 1 N N N N N N 9.790 -15.498 4.258 5.375 0.282 -0.262 C6A Y33 20
Y33 C8A C16 C 0 1 N N N N N N 11.631 -16.811 5.104 7.582 0.404 0.764 C8A Y33 21
Y33 C9A C17 C 0 1 N N N N N N 10.852 -14.939 6.439 5.951 2.343 0.903 C9A Y33 22
Y33 N3A N2 N 0 1 N N N N N N 7.988 -14.302 3.176 3.401 0.141 -1.693 N3A Y33 23
Y33 N7A N3 N 0 1 N N N N N N 10.690 -15.718 5.222 6.276 0.989 0.448 N7A Y33 24
Y33 O6A O5 O 0 1 N N N N N N 9.834 -16.130 3.209 5.644 -0.839 -0.638 O6A Y33 25
Y33 S21 S1 S 0 1 N N N N N N 5.991 -16.448 4.136 0.660 -0.459 1.143 S21 Y33 26
Y33 H1 H1 H 0 1 N N N N N N 3.055 -15.033 4.172 -1.983 1.289 0.753 H1 Y33 27
Y33 H2 H2 H 0 1 N N N N N N 3.112 -16.819 4.349 -1.060 1.425 -0.775 H2 Y33 28
Y33 H5 H5 H 0 1 N N N N N N 3.194 -16.442 0.543 -3.254 -1.891 -1.342 H5 Y33 29
Y33 H7 H7 H 0 1 N N N N N N 1.364 -17.637 3.474 -4.989 0.020 -0.656 H7 Y33 30
Y33 H8 H8 H 0 1 N Y N N N N 0.628 -17.843 -0.538 -5.785 3.467 -0.510 H8 Y33 31
Y33 H9 H9 H 0 1 N N N N N N 1.437 -14.220 2.569 -3.684 0.289 -2.909 H9 Y33 32
Y33 H10 H10 H 0 1 N N N N N N 3.013 -14.169 1.709 -3.021 1.835 -2.328 H10 Y33 33
Y33 H11 H11 H 0 1 N N N N N N 1.562 -14.835 0.886 -1.922 0.530 -2.834 H11 Y33 34
Y33 H12 H12 H 0 1 N N N N N N -0.179 -15.389 2.123 -3.155 0.648 1.698 H12 Y33 35
Y33 H13 H13 H 0 1 N N N N N N -2.185 -16.465 3.120 -6.179 0.251 1.603 H13 Y33 36
Y33 H14 H14 H 0 1 N N N N N N -1.386 -17.536 1.920 -5.203 0.438 3.079 H14 Y33 37
Y33 H15 H15 H 0 1 N N N N N N -1.166 -17.835 3.677 -5.344 1.789 1.929 H15 Y33 38
Y33 H16 H16 H 0 1 N N N N N N 7.133 -18.143 0.708 -1.216 -4.768 -0.487 H16 Y33 39
Y33 H17 H17 H 0 1 N N N N N N -0.636 -14.998 4.392 -3.144 -1.605 1.073 H17 Y33 40
Y33 H18 H18 H 0 1 N N N N N N 5.525 -14.506 5.409 1.230 1.359 -0.353 H18 Y33 41
Y33 H19 H19 H 0 1 N N N N N N 6.537 -12.902 3.860 2.293 -1.471 -0.874 H19 Y33 42
Y33 H20 H20 H 0 1 N N N N N N 5.901 -14.181 2.773 1.373 -0.411 -1.985 H20 Y33 43
Y33 H21 H21 H 0 1 N N N N N N 7.904 -15.863 5.900 3.056 1.711 1.180 H21 Y33 44
Y33 H22 H22 H 0 1 N N N N N N 7.675 -14.134 6.330 3.412 -0.043 1.291 H22 Y33 45
Y33 H23 H23 H 0 1 N N N N N N 9.185 -13.505 4.742 4.153 1.931 -0.864 H23 Y33 46
Y33 H24 H24 H 0 1 N N N N N N 12.285 -16.830 5.988 8.289 0.645 -0.029 H24 Y33 47
Y33 H25 H25 H 0 1 N N N N N N 11.082 -17.762 5.034 7.943 0.811 1.709 H25 Y33 48
Y33 H26 H26 H 0 1 N N N N N N 12.242 -16.673 4.200 7.484 -0.678 0.848 H26 Y33 49
Y33 H27 H27 H 0 1 N N N N N N 11.673 -15.360 7.038 5.075 2.308 1.551 H27 Y33 50
Y33 H28 H28 H 0 1 N N N N N N 11.086 -13.896 6.178 6.796 2.754 1.456 H28 Y33 51
Y33 H29 H29 H 0 1 N N N N N N 9.920 -14.971 7.022 5.740 2.976 0.041 H29 Y33 52
Y33 H30 H30 H 0 1 N N N N N N 8.002 -15.153 2.652 4.018 -0.575 -2.047 H30 Y33 53
Y33 O7A O7A O 0 1 N Y N N N N 0.619 -17.206 0.166 -5.673 2.510 -0.431 O7A Y33 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y33 O31 C31 DOUB N N 1
Y33 C31 O32 SING N N 2
Y33 C31 C3 SING N N 3
Y33 C7 O7 DOUB N N 4
Y33 C7 C6 SING N N 5
Y33 N4 C3 SING N N 6
Y33 N4 C5 SING N N 7
Y33 C3 C2 DOUB N N 8
Y33 C26 C5 SING N N 9
Y33 C5 C6 SING N N 10
Y33 C5 C1 SING N N 11
Y33 C6 C61 SING N N 12
Y33 C62 C61 SING N N 13
Y33 C61 O62 SING N N 14
Y33 C2 C1 SING N N 15
Y33 C2 S21 SING N N 16
Y33 N3A C2A SING N N 17
Y33 N3A C5A SING N N 18
Y33 O6A C6A DOUB N N 19
Y33 C2A C1A SING N N 20
Y33 S21 C1A SING N N 21
Y33 C6A C5A SING N N 22
Y33 C6A N7A SING N N 23
Y33 C5A C4A SING N N 24
Y33 C1A C4A SING N N 25
Y33 C8A N7A SING N N 26
Y33 N7A C9A SING N N 27
Y33 C1 H1 SING N N 28
Y33 C1 H2 SING N N 29
Y33 N4 H5 SING N N 30
Y33 C6 H7 SING N N 31
Y33 C26 H9 SING N N 32
Y33 C26 H10 SING N N 33
Y33 C26 H11 SING N N 34
Y33 C61 H12 SING N N 35
Y33 C62 H13 SING N N 36
Y33 C62 H14 SING N N 37
Y33 C62 H15 SING N N 38
Y33 O32 H16 SING N N 39
Y33 O62 H17 SING N N 40
Y33 C1A H18 SING N N 41
Y33 C2A H19 SING N N 42
Y33 C2A H20 SING N N 43
Y33 C4A H21 SING N N 44
Y33 C4A H22 SING N N 45
Y33 C5A H23 SING N N 46
Y33 C8A H24 SING N N 47
Y33 C8A H25 SING N N 48
Y33 C8A H26 SING N N 49
Y33 C9A H27 SING N N 50
Y33 C9A H28 SING N N 51
Y33 C9A H29 SING N N 52
Y33 N3A H30 SING N N 53
Y33 C7 O7A SING N N 54
Y33 O7A H8 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y33 SMILES ACDLabs 12.01 'CC1(CC(SC2CC(NC2)C(=O)N(C)C)=C(N1)C(=O)O)C(C(O)C)C(=O)O'
Y33 InChI InChI 1.06 'InChI=1S/C17H27N3O6S/c1-8(21)12(15(23)24)17(2)6-11(13(19-17)16(25)26)27-9-5-10(18-7-9)14(22)20(3)4/h8-10,12,18-19,21H,5-7H2,1-4H3,(H,23,24)(H,25,26)/t8-,9+,10+,12+,17-/m1/s1'
Y33 InChIKey InChI 1.06 VXMSHTHJORSDKD-YTOYJYLESA-N
Y33 SMILES_CANONICAL CACTVS 3.385 'C[C@@H](O)[C@@H](C(O)=O)[C@@]1(C)CC(=C(N1)C(O)=O)S[C@@H]2CN[C@@H](C2)C(=O)N(C)C'
Y33 SMILES CACTVS 3.385 'C[CH](O)[CH](C(O)=O)[C]1(C)CC(=C(N1)C(O)=O)S[CH]2CN[CH](C2)C(=O)N(C)C'
Y33 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'C[C@H]([C@@H](C(=O)O)[C@]1(CC(=C(N1)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)N(C)C)C)O'
Y33 SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C(C(=O)O)C1(CC(=C(N1)C(=O)O)SC2CC(NC2)C(=O)N(C)C)C)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y33 'SYSTEMATIC NAME' ACDLabs 12.01 '(5R)-5-[(1S,2R)-1-carboxy-2-hydroxypropyl]-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid'
Y33 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(2~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-2-methyl-1,3-dihydropyrrole-5-carboxylic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y33 'Create component' 2023-01-03 RCSB
Y33 'Initial release' 2023-10-11 RCSB
Y33 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id Y33
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C7
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y33 C1 C 9.882 0.230 1
Y33 C2 C 10.345 -1.197 2
Y33 C3 C 11.845 -1.197 3
Y33 N4 N 12.309 0.230 4
Y33 C5 C 11.095 1.111 5
Y33 C6 C 11.977 2.325 6
Y33 C7 C 11.367 3.695 7
Y33 C26 C 10.214 2.325 8
Y33 C31 C 12.727 -2.410 9
Y33 C61 C 13.469 2.168 10
Y33 C62 C 14.351 3.382 11
Y33 O31 O 14.219 -2.254 12
Y33 O32 O 12.117 -3.781 13
Y33 O62 O 14.079 0.798 14
Y33 O7 O 12.249 4.909 15
Y33 C1A C 7.972 -2.254 16
Y33 C2A C 7.222 -0.955 17
Y33 C4A C 6.968 -3.368 18
Y33 C5A C 5.598 -2.758 19
Y33 C6A C 4.299 -3.508 20
Y33 C8A C 3.000 -5.758 21
Y33 C9A C 5.598 -5.758 22
Y33 N3A N 5.755 -1.266 23
Y33 N7A N 4.299 -5.008 24
Y33 O6A O 3.000 -2.758 25
Y33 S21 S 9.464 -2.410 26
Y33 O7A O 9.875 3.852 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y33 O31 C31 DOUBLE NONE 1
Y33 C31 O32 SINGLE NONE 2
Y33 C31 C3 SINGLE NONE 3
Y33 C7 O7 DOUBLE NONE 4
Y33 C6 C7 SINGLE BEGINDASH 5
Y33 N4 C3 SINGLE NONE 6
Y33 N4 C5 SINGLE NONE 7
Y33 C3 C2 DOUBLE NONE 8
Y33 C5 C26 SINGLE BEGINWEDGE 9
Y33 C5 C6 SINGLE NONE 10
Y33 C5 C1 SINGLE NONE 11
Y33 C6 C61 SINGLE NONE 12
Y33 C61 C62 SINGLE BEGINWEDGE 13
Y33 C61 O62 SINGLE NONE 14
Y33 C2 C1 SINGLE NONE 15
Y33 C2 S21 SINGLE NONE 16
Y33 N3A C2A SINGLE NONE 17
Y33 N3A C5A SINGLE NONE 18
Y33 O6A C6A DOUBLE NONE 19
Y33 C2A C1A SINGLE NONE 20
Y33 C1A S21 SINGLE BEGINWEDGE 21
Y33 C5A C6A SINGLE BEGINWEDGE 22
Y33 C6A N7A SINGLE NONE 23
Y33 C5A C4A SINGLE NONE 24
Y33 C1A C4A SINGLE NONE 25
Y33 C8A N7A SINGLE NONE 26
Y33 N7A C9A SINGLE NONE 27
Y33 C7 O7A SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y33 MurckoScaffold S1 scaffold 'C1=C(S[C@H]2CCNC2)CCN1' InChI=1S/C8H14N2S/c1-3-9-5-7(1)11-8-2-4-10-6-8/h5,8-10H,1-4,6H2/t8-/m0/s1 LXSNUGMHUXZOEC-QMMMGPOBSA-N
Y33 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y33 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
Y33 2-pyrroline F3 fragment C1=CNCC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1,3,5H,2,4H2 RSEBUVRVKCANEP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y33 C1 S1 1
Y33 C2 S1 1
Y33 C3 S1 1
Y33 N4 S1 1
Y33 C5 S1 1
Y33 C1A S1 1
Y33 C2A S1 1
Y33 C4A S1 1
Y33 C5A S1 1
Y33 N3A S1 1
Y33 S21 S1 1
Y33 N7A F1 1
Y33 C6A F1 1
Y33 O6A F1 1
Y33 C5A F1 1
Y33 O31 F2 1
Y33 C31 F2 1
Y33 C3 F2 1
Y33 N4 F2 1
Y33 O6A F2 2
Y33 C6A F2 2
Y33 C5A F2 2
Y33 N3A F2 2
Y33 C5 F3 1
Y33 C1 F3 1
Y33 C2 F3 1
Y33 C3 F3 1
Y33 N4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y33
_pdbe_chem_comp_rdkit_properties.exactmw 401.162
_pdbe_chem_comp_rdkit_properties.amw 401.485
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.706
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 200.037
_pdbe_chem_comp_rdkit_properties.tpsa 139.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.332
_pdbe_chem_comp_rdkit_properties.CrippenMR 100.107
_pdbe_chem_comp_rdkit_properties.chi0v 13.516
_pdbe_chem_comp_rdkit_properties.chi1v 7.265
_pdbe_chem_comp_rdkit_properties.chi2v 3.783
_pdbe_chem_comp_rdkit_properties.chi3v 3.783
_pdbe_chem_comp_rdkit_properties.chi4v 2.700
_pdbe_chem_comp_rdkit_properties.chi0n 39.699
_pdbe_chem_comp_rdkit_properties.chi1n 19.567
_pdbe_chem_comp_rdkit_properties.chi2n 2.886
_pdbe_chem_comp_rdkit_properties.chi3n 2.886
_pdbe_chem_comp_rdkit_properties.chi4n 1.833
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.780
_pdbe_chem_comp_rdkit_properties.kappa1 5.223
_pdbe_chem_comp_rdkit_properties.kappa2 8.073
_pdbe_chem_comp_rdkit_properties.kappa3 4.558
_pdbe_chem_comp_rdkit_properties.Phi 1.562
#
_pdbe_chem_comp_external_mappings.comp_id Y33
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168654904
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y33 C1 -1.216 -0.193 -0.252 ETKDGv3 1
Y33 C2 -0.728 1.148 0.190 ETKDGv3 2
Y33 C3 -1.519 1.658 1.126 ETKDGv3 3
Y33 N4 -2.567 0.760 1.451 ETKDGv3 4
Y33 C5 -2.450 -0.460 0.660 ETKDGv3 5
Y33 C6 -3.782 -0.728 -0.130 ETKDGv3 6
Y33 C7 -3.704 -2.033 -0.891 ETKDGv3 7
Y33 C26 -2.149 -1.619 1.634 ETKDGv3 8
Y33 C31 -1.383 2.974 1.782 ETKDGv3 9
Y33 C61 -4.241 0.436 -1.070 ETKDGv3 10
Y33 C62 -5.583 0.131 -1.758 ETKDGv3 11
Y33 O31 -2.205 3.309 2.676 ETKDGv3 12
Y33 O32 -0.367 3.856 1.428 ETKDGv3 13
Y33 O62 -4.349 1.651 -0.372 ETKDGv3 14
Y33 O7 -3.009 -2.127 -1.938 ETKDGv3 15
Y33 C1A 1.870 1.416 0.779 ETKDGv3 16
Y33 C2A 3.210 2.134 0.658 ETKDGv3 17
Y33 C4A 2.220 -0.053 0.694 ETKDGv3 18
Y33 C5A 3.640 -0.113 1.236 ETKDGv3 19
Y33 C6A 4.440 -1.248 0.634 ETKDGv3 20
Y33 C8A 4.889 -0.101 -1.598 ETKDGv3 21
Y33 C9A 5.159 -2.610 -1.340 ETKDGv3 22
Y33 N3A 4.275 1.185 0.993 ETKDGv3 23
Y33 N7A 4.804 -1.307 -0.766 ETKDGv3 24
Y33 O6A 4.748 -2.211 1.389 ETKDGv3 25
Y33 S21 0.711 1.941 -0.541 ETKDGv3 26
Y33 H1 -1.464 -0.148 -1.330 ETKDGv3 27
Y33 H2 -0.416 -0.952 -0.119 ETKDGv3 28
Y33 H5 -3.285 0.922 2.193 ETKDGv3 29
Y33 H7 -4.585 -0.850 0.632 ETKDGv3 30
Y33 H8 -4.351 -4.031 -0.913 ETKDGv3 31
Y33 H9 -1.928 -2.558 1.083 ETKDGv3 32
Y33 H10 -3.015 -1.796 2.307 ETKDGv3 33
Y33 H11 -1.266 -1.375 2.264 ETKDGv3 34
Y33 H12 -3.494 0.582 -1.877 ETKDGv3 35
Y33 H13 -6.365 -0.103 -1.003 ETKDGv3 36
Y33 H14 -5.484 -0.726 -2.455 ETKDGv3 37
Y33 H15 -5.912 1.014 -2.347 ETKDGv3 38
Y33 H16 -0.277 4.757 1.881 ETKDGv3 39
Y33 H17 -5.043 1.534 0.329 ETKDGv3 40
Y33 H18 1.435 1.636 1.780 ETKDGv3 41
Y33 H19 3.235 3.020 1.332 ETKDGv3 42
Y33 H20 3.377 2.490 -0.381 ETKDGv3 43
Y33 H21 2.169 -0.408 -0.359 ETKDGv3 44
Y33 H22 1.531 -0.667 1.315 ETKDGv3 45
Y33 H23 3.568 -0.276 2.338 ETKDGv3 46
Y33 H24 3.896 0.383 -1.683 ETKDGv3 47
Y33 H25 5.233 -0.334 -2.627 ETKDGv3 48
Y33 H26 5.620 0.608 -1.158 ETKDGv3 49
Y33 H27 6.058 -3.013 -0.829 ETKDGv3 50
Y33 H28 4.314 -3.319 -1.208 ETKDGv3 51
Y33 H29 5.380 -2.539 -2.426 ETKDGv3 52
Y33 H30 4.752 1.501 1.871 ETKDGv3 53
Y33 O7A -4.396 -3.146 -0.421 ETKDGv3 54
#