Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VMJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C23 C C doub 1.38 N Y
2 C22 C21 C C sing 1.38 N Y
3 C23 C24 C C sing 1.38 N Y
4 C21 C20 C C doub 1.38 N Y
5 C24 C25 C C doub 1.38 N Y
6 C20 C25 C C sing 1.38 N Y
7 C20 C19 C C sing 1.51 N N
8 C19 C26 C C sing 1.53 N N
9 C19 S18 C S sing 1.81 N N
10 C10 N9 C N sing 1.46 N N
11 S18 C3 S C sing 1.76 N N
12 N4 C3 N C doub 1.31 N N
13 N4 C5 N C sing 1.34 N N
14 N9 C5 N C sing 1.36 N Y
15 N9 N8 N N sing 1.4 N Y
16 C3 N2 C N sing 1.37 N N
17 C5 C6 C C doub 1.41 N Y
18 N8 C7 N C doub 1.3 N Y
19 N2 C12 N C sing 1.4 N N
20 N2 C1 N C sing 1.35 N N
21 C6 C7 C C sing 1.41 N Y
22 C6 C1 C C sing 1.42 N N
23 C13 C12 C C doub 1.39 N Y
24 C13 C14 C C sing 1.38 N Y
25 C12 C17 C C sing 1.39 N Y
26 C14 C15 C C doub 1.38 N Y
27 C1 O11 C O doub 1.22 N N
28 C17 C16 C C doub 1.38 N Y
29 C15 C16 C C sing 1.38 N Y
30 C15 C27 C C sing 1.51 N N
31 C27 O27 C O sing 1.43 N N
32 C13 H1 C H sing 1.08 N N
33 C14 H2 C H sing 1.08 N N
34 C27 H3 C H sing 1.09 N N
35 C27 H4 C H sing 1.09 N N
36 O27 H5 O H sing 0.97 N N
37 C16 H6 C H sing 1.08 N N
38 C17 H7 C H sing 1.08 N N
39 C10 H8 C H sing 1.09 N N
40 C10 H9 C H sing 1.09 N N
41 C10 H10 C H sing 1.09 N N
42 C7 H11 C H sing 1.08 N N
43 C19 H12 C H sing 1.09 N N
44 C26 H13 C H sing 1.09 N N
45 C26 H14 C H sing 1.09 N N
46 C26 H15 C H sing 1.09 N N
47 C21 H16 C H sing 1.08 N N
48 C22 H17 C H sing 1.08 N N
49 C23 H18 C H sing 1.08 N N
50 C24 H19 C H sing 1.08 N N
51 C25 H20 C H sing 1.08 N N