data_VMJ
#
_chem_comp.id VMJ
_chem_comp.name
5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H20 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-27
_chem_comp.pdbx_modified_date 2020-12-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 392.474
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VMJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7JWV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VMJ O11 O1 O 0 1 N N N N N N 15.130 146.611 17.670 -3.744 -1.112 0.084 O11 VMJ 1
VMJ C1 C1 C 0 1 N N N N N N 15.808 146.618 16.620 -2.923 -0.212 0.062 C1 VMJ 2
VMJ N2 N1 N 0 1 N N N N N N 16.133 147.849 15.989 -1.599 -0.482 0.038 N2 VMJ 3
VMJ C12 C2 C 0 1 Y N N N N N 15.600 149.043 16.498 -1.158 -1.812 0.038 C12 VMJ 4
VMJ C13 C3 C 0 1 Y N N N N N 14.276 149.240 16.125 -0.960 -2.479 -1.163 C13 VMJ 5
VMJ C14 C4 C 0 1 Y N N N N N 13.583 150.365 16.512 -0.525 -3.790 -1.160 C14 VMJ 6
VMJ C15 C5 C 0 1 Y N N N N N 14.207 151.334 17.287 -0.287 -4.438 0.038 C15 VMJ 7
VMJ C27 C6 C 0 1 N N N N N N 13.360 152.527 17.669 0.186 -5.869 0.037 C27 VMJ 8
VMJ O27 O2 O 0 1 N N N N N N 13.627 152.977 19.000 1.615 -5.898 0.013 O27 VMJ 9
VMJ C16 C7 C 0 1 Y N N N N N 15.551 151.149 17.666 -0.483 -3.777 1.236 C16 VMJ 10
VMJ C17 C8 C 0 1 Y N N N N N 16.250 150.002 17.267 -0.913 -2.464 1.239 C17 VMJ 11
VMJ C3 C9 C 0 1 N N N N N N 16.878 147.875 14.784 -0.688 0.537 0.014 C3 VMJ 12
VMJ N4 N2 N 0 1 N N N N N N 17.367 146.707 14.207 -1.053 1.799 0.014 N4 VMJ 13
VMJ C5 C10 C 0 1 Y N N N N N 17.114 145.475 14.785 -2.347 2.147 0.037 C5 VMJ 14
VMJ N9 N3 N 0 1 Y N N N N N 17.430 144.214 14.485 -3.003 3.338 0.043 N9 VMJ 15
VMJ C10 C11 C 0 1 N N N N N N 18.215 143.642 13.364 -2.378 4.662 0.023 C10 VMJ 16
VMJ N8 N4 N 0 1 Y N N N N N 16.906 143.277 15.413 -4.379 3.081 0.072 N8 VMJ 17
VMJ C7 C12 C 0 1 Y N N N N N 16.236 143.981 16.354 -4.583 1.794 0.084 C7 VMJ 18
VMJ C6 C13 C 0 1 Y N N N N N 16.321 145.361 16.017 -3.332 1.145 0.056 C6 VMJ 19
VMJ S18 S1 S 0 1 N N N N N N 17.223 149.355 14.022 1.030 0.145 -0.018 S18 VMJ 20
VMJ C19 C14 C 0 1 N N R N N N 18.465 149.131 12.778 1.732 1.813 -0.042 C19 VMJ 21
VMJ C26 C15 C 0 1 N N N N N N 19.861 149.219 13.412 1.342 2.512 -1.347 C26 VMJ 22
VMJ C20 C16 C 0 1 Y N N N N N 18.282 150.153 11.714 3.234 1.728 0.052 C20 VMJ 23
VMJ C21 C17 C 0 1 Y N N N N N 18.005 149.778 10.397 3.950 1.055 -0.919 C21 VMJ 24
VMJ C22 C18 C 0 1 Y N N N N N 17.836 150.756 9.406 5.328 0.981 -0.835 C22 VMJ 25
VMJ C23 C19 C 0 1 Y N N N N N 17.945 152.108 9.729 5.990 1.580 0.220 C23 VMJ 26
VMJ C24 C20 C 0 1 Y N N N N N 18.219 152.477 11.041 5.273 2.254 1.191 C24 VMJ 27
VMJ C25 C21 C 0 1 Y N N N N N 18.390 151.507 12.024 3.895 2.327 1.108 C25 VMJ 28
VMJ H1 H1 H 0 1 N N N N N N 13.781 148.496 15.519 -1.146 -1.974 -2.099 H1 VMJ 29
VMJ H2 H2 H 0 1 N N N N N N 12.553 150.494 16.213 -0.371 -4.310 -2.095 H2 VMJ 30
VMJ H3 H3 H 0 1 N N N N N N 13.570 153.349 16.969 -0.171 -6.371 0.937 H3 VMJ 31
VMJ H4 H4 H 0 1 N N N N N N 12.299 152.246 17.597 -0.202 -6.380 -0.843 H4 VMJ 32
VMJ H5 H5 H 0 1 N N N N N N 13.076 153.725 19.198 1.991 -6.789 0.011 H5 VMJ 33
VMJ H6 H6 H 0 1 N N N N N N 16.046 151.896 18.268 -0.296 -4.286 2.170 H6 VMJ 34
VMJ H7 H7 H 0 1 N N N N N N 17.282 149.864 17.554 -1.062 -1.946 2.175 H7 VMJ 35
VMJ H8 H8 H 0 1 N N N N N N 18.249 142.547 13.461 -2.243 4.985 -1.010 H8 VMJ 36
VMJ H9 H9 H 0 1 N N N N N N 17.740 143.911 12.409 -3.016 5.374 0.545 H9 VMJ 37
VMJ H10 H10 H 0 1 N N N N N N 19.238 144.044 13.390 -1.407 4.614 0.517 H10 VMJ 38
VMJ H11 H11 H 0 1 N N N N N N 15.726 143.568 17.211 -5.547 1.307 0.106 H11 VMJ 39
VMJ H12 H12 H 0 1 N N N N N N 18.317 148.124 12.362 1.347 2.382 0.804 H12 VMJ 40
VMJ H13 H13 H 0 1 N N N N N N 19.959 148.450 14.192 1.765 3.516 -1.362 H13 VMJ 41
VMJ H14 H14 H 0 1 N N N N N N 20.626 149.056 12.638 1.728 1.943 -2.193 H14 VMJ 42
VMJ H15 H15 H 0 1 N N N N N N 19.998 150.215 13.859 0.256 2.573 -1.415 H15 VMJ 43
VMJ H16 H16 H 0 1 N N N N N N 17.921 148.732 10.141 3.434 0.586 -1.744 H16 VMJ 44
VMJ H17 H17 H 0 1 N N N N N N 17.621 150.461 8.390 5.888 0.454 -1.594 H17 VMJ 45
VMJ H18 H18 H 0 1 N N N N N N 17.818 152.862 8.966 7.066 1.522 0.286 H18 VMJ 46
VMJ H19 H19 H 0 1 N N N N N N 18.300 153.523 11.299 5.790 2.723 2.016 H19 VMJ 47
VMJ H20 H20 H 0 1 N N N N N N 18.609 151.807 13.038 3.336 2.857 1.865 H20 VMJ 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VMJ C22 C23 DOUB Y N 1
VMJ C22 C21 SING Y N 2
VMJ C23 C24 SING Y N 3
VMJ C21 C20 DOUB Y N 4
VMJ C24 C25 DOUB Y N 5
VMJ C20 C25 SING Y N 6
VMJ C20 C19 SING N N 7
VMJ C19 C26 SING N N 8
VMJ C19 S18 SING N N 9
VMJ C10 N9 SING N N 10
VMJ S18 C3 SING N N 11
VMJ N4 C3 DOUB N N 12
VMJ N4 C5 SING N N 13
VMJ N9 C5 SING Y N 14
VMJ N9 N8 SING Y N 15
VMJ C3 N2 SING N N 16
VMJ C5 C6 DOUB Y N 17
VMJ N8 C7 DOUB Y N 18
VMJ N2 C12 SING N N 19
VMJ N2 C1 SING N N 20
VMJ C6 C7 SING Y N 21
VMJ C6 C1 SING N N 22
VMJ C13 C12 DOUB Y N 23
VMJ C13 C14 SING Y N 24
VMJ C12 C17 SING Y N 25
VMJ C14 C15 DOUB Y N 26
VMJ C1 O11 DOUB N N 27
VMJ C17 C16 DOUB Y N 28
VMJ C15 C16 SING Y N 29
VMJ C15 C27 SING N N 30
VMJ C27 O27 SING N N 31
VMJ C13 H1 SING N N 32
VMJ C14 H2 SING N N 33
VMJ C27 H3 SING N N 34
VMJ C27 H4 SING N N 35
VMJ O27 H5 SING N N 36
VMJ C16 H6 SING N N 37
VMJ C17 H7 SING N N 38
VMJ C10 H8 SING N N 39
VMJ C10 H9 SING N N 40
VMJ C10 H10 SING N N 41
VMJ C7 H11 SING N N 42
VMJ C19 H12 SING N N 43
VMJ C26 H13 SING N N 44
VMJ C26 H14 SING N N 45
VMJ C26 H15 SING N N 46
VMJ C21 H16 SING N N 47
VMJ C22 H17 SING N N 48
VMJ C23 H18 SING N N 49
VMJ C24 H19 SING N N 50
VMJ C25 H20 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VMJ SMILES ACDLabs 12.01 O=C2N(c1ccc(cc1)CO)C(=Nc3c2cnn3C)SC(C)c4ccccc4
VMJ InChI InChI 1.03 InChI=1S/C21H20N4O2S/c1-14(16-6-4-3-5-7-16)28-21-23-19-18(12-22-24(19)2)20(27)25(21)17-10-8-15(13-26)9-11-17/h3-12,14,26H,13H2,1-2H3/t14-/m1/s1
VMJ InChIKey InChI 1.03 CXENUIKHQIZUDG-CQSZACIVSA-N
VMJ SMILES_CANONICAL CACTVS 3.385 C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4
VMJ SMILES CACTVS 3.385 C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4
VMJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H](c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO
VMJ SMILES "OpenEye OEToolkits" 2.0.7 CC(c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VMJ "SYSTEMATIC NAME" ACDLabs 12.01 5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one
VMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 5-[4-(hydroxymethyl)phenyl]-1-methyl-6-[(1~{R})-1-phenylethyl]sulfanyl-pyrazolo[3,4-d]pyrimidin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VMJ 'Create component' 2020-08-27 RCSB
VMJ 'Initial release' 2020-12-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VMJ O11 O 10.301 3.143 1
VMJ C1 C 10.301 1.643 2
VMJ N2 N 9.002 0.892 3
VMJ C12 C 7.702 1.643 4
VMJ C13 C 6.404 0.892 5
VMJ C14 C 5.104 1.643 6
VMJ C15 C 5.104 3.143 7
VMJ C27 C 3.805 3.893 8
VMJ O27 O 3.805 5.393 9
VMJ C16 C 6.404 3.893 10
VMJ C17 C 7.702 3.143 11
VMJ C3 C 9.002 -0.608 12
VMJ N4 N 10.301 -1.357 13
VMJ C5 C 11.600 -0.608 14
VMJ N9 N 13.019 -1.065 15
VMJ C10 C 13.485 -2.490 16
VMJ N8 N 13.894 0.142 17
VMJ C7 C 13.019 1.350 18
VMJ C6 C 11.600 0.892 19
VMJ S18 S 7.702 -1.357 20
VMJ C19 C 7.702 -2.857 21
VMJ C26 C 9.002 -3.607 22
VMJ C20 C 6.404 -3.607 23
VMJ C21 C 6.404 -5.107 24
VMJ C22 C 5.104 -5.857 25
VMJ C23 C 3.805 -5.107 26
VMJ C24 C 3.805 -3.607 27
VMJ C25 C 5.104 -2.857 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VMJ C22 C23 SINGLE NONE 1
VMJ C22 C21 DOUBLE NONE 2
VMJ C23 C24 DOUBLE NONE 3
VMJ C21 C20 SINGLE NONE 4
VMJ C24 C25 SINGLE NONE 5
VMJ C20 C25 DOUBLE NONE 6
VMJ C20 C19 SINGLE NONE 7
VMJ C19 C26 SINGLE BEGINDASH 8
VMJ C19 S18 SINGLE NONE 9
VMJ C10 N9 SINGLE NONE 10
VMJ S18 C3 SINGLE NONE 11
VMJ N4 C3 DOUBLE NONE 12
VMJ N4 C5 SINGLE NONE 13
VMJ N9 C5 SINGLE NONE 14
VMJ N9 N8 SINGLE NONE 15
VMJ C3 N2 SINGLE NONE 16
VMJ C5 C6 DOUBLE NONE 17
VMJ N8 C7 DOUBLE NONE 18
VMJ N2 C12 SINGLE NONE 19
VMJ N2 C1 SINGLE NONE 20
VMJ C6 C7 SINGLE NONE 21
VMJ C6 C1 SINGLE NONE 22
VMJ C13 C12 DOUBLE NONE 23
VMJ C13 C14 SINGLE NONE 24
VMJ C12 C17 SINGLE NONE 25
VMJ C14 C15 DOUBLE NONE 26
VMJ C1 O11 DOUBLE NONE 27
VMJ C17 C16 DOUBLE NONE 28
VMJ C15 C16 SINGLE NONE 29
VMJ C15 C27 SINGLE NONE 30
VMJ C27 O27 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VMJ MurckoScaffold S1 scaffold 'O=c1c2cn[nH]c2nc(SCc2ccccc2)n1-c1ccccc1' InChI=1S/C18H14N4OS/c23-17-15-11-19-21-16(15)20-18(22(17)14-9-5-2-6-10-14)24-12-13-7-3-1-4-8-13/h1-11H,12H2,(H,19,21) KOSBCIAPLSFWFG-UHFFFAOYSA-N
VMJ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VMJ pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
VMJ pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VMJ O11 S1 1
VMJ C1 S1 1
VMJ N2 S1 1
VMJ C12 S1 1
VMJ C13 S1 1
VMJ C14 S1 1
VMJ C15 S1 1
VMJ C16 S1 1
VMJ C17 S1 1
VMJ C3 S1 1
VMJ N4 S1 1
VMJ C5 S1 1
VMJ N9 S1 1
VMJ N8 S1 1
VMJ C7 S1 1
VMJ C6 S1 1
VMJ S18 S1 1
VMJ C19 S1 1
VMJ C20 S1 1
VMJ C21 S1 1
VMJ C22 S1 1
VMJ C23 S1 1
VMJ C24 S1 1
VMJ C25 S1 1
VMJ C12 F1 1
VMJ C13 F1 1
VMJ C14 F1 1
VMJ C15 F1 1
VMJ C16 F1 1
VMJ C17 F1 1
VMJ C20 F1 2
VMJ C21 F1 2
VMJ C22 F1 2
VMJ C23 F1 2
VMJ C24 F1 2
VMJ C25 F1 2
VMJ C5 F2 1
VMJ C6 F2 1
VMJ C7 F2 1
VMJ N8 F2 1
VMJ N9 F2 1
VMJ C6 F3 1
VMJ C5 F3 1
VMJ N4 F3 1
VMJ C3 F3 1
VMJ N2 F3 1
VMJ C1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VMJ
_pdbe_chem_comp_rdkit_properties.exactmw 392.131
_pdbe_chem_comp_rdkit_properties.amw 392.484
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.190
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 194.208
_pdbe_chem_comp_rdkit_properties.tpsa 72.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.529
_pdbe_chem_comp_rdkit_properties.CrippenMR 108.022
_pdbe_chem_comp_rdkit_properties.chi0v 14.330
_pdbe_chem_comp_rdkit_properties.chi1v 8.122
_pdbe_chem_comp_rdkit_properties.chi2v 4.218
_pdbe_chem_comp_rdkit_properties.chi3v 4.218
_pdbe_chem_comp_rdkit_properties.chi4v 2.914
_pdbe_chem_comp_rdkit_properties.chi0n 33.514
_pdbe_chem_comp_rdkit_properties.chi1n 17.214
_pdbe_chem_comp_rdkit_properties.chi2n 3.354
_pdbe_chem_comp_rdkit_properties.chi3n 3.354
_pdbe_chem_comp_rdkit_properties.chi4n 2.129
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.900
_pdbe_chem_comp_rdkit_properties.kappa1 6.301
_pdbe_chem_comp_rdkit_properties.kappa2 7.613
_pdbe_chem_comp_rdkit_properties.kappa3 3.342
_pdbe_chem_comp_rdkit_properties.Phi 1.713
#
_pdbe_chem_comp_external_mappings.comp_id VMJ
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155289380
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VMJ O11 -3.369 0.056 -0.804 ETKDGv3 1
VMJ C1 -2.549 -0.883 -0.613 ETKDGv3 2
VMJ N2 -1.350 -0.701 0.177 ETKDGv3 3
VMJ C12 -1.082 0.567 0.802 ETKDGv3 4
VMJ C13 -1.021 1.691 0.066 ETKDGv3 5
VMJ C14 -0.738 2.991 0.708 ETKDGv3 6
VMJ C15 -0.519 3.059 2.032 ETKDGv3 7
VMJ C27 -0.237 4.379 2.693 ETKDGv3 8
VMJ O27 -1.436 5.060 2.940 ETKDGv3 9
VMJ C16 -0.624 1.828 2.851 ETKDGv3 10
VMJ C17 -0.895 0.653 2.271 ETKDGv3 11
VMJ C3 -0.450 -1.839 0.344 ETKDGv3 12
VMJ N4 -0.738 -2.997 -0.190 ETKDGv3 13
VMJ C5 -1.941 -3.175 -0.945 ETKDGv3 14
VMJ N9 -2.323 -4.324 -1.680 ETKDGv3 15
VMJ C10 -1.451 -5.429 -2.048 ETKDGv3 16
VMJ N8 -3.466 -3.958 -2.409 ETKDGv3 17
VMJ C7 -3.773 -2.731 -2.109 ETKDGv3 18
VMJ C6 -2.790 -2.208 -1.164 ETKDGv3 19
VMJ S18 1.097 -1.696 1.253 ETKDGv3 20
VMJ C19 2.128 -1.344 -0.220 ETKDGv3 21
VMJ C26 3.557 -1.832 0.025 ETKDGv3 22
VMJ C20 2.112 0.131 -0.553 ETKDGv3 23
VMJ C21 1.704 0.572 -1.912 ETKDGv3 24
VMJ C22 1.718 1.871 -2.235 ETKDGv3 25
VMJ C23 2.139 2.877 -1.240 ETKDGv3 26
VMJ C24 2.506 2.492 -0.013 ETKDGv3 27
VMJ C25 2.492 1.059 0.348 ETKDGv3 28
VMJ H1 -1.155 1.653 -1.007 ETKDGv3 29
VMJ H2 -0.692 3.881 0.093 ETKDGv3 30
VMJ H3 0.327 4.229 3.641 ETKDGv3 31
VMJ H4 0.402 5.005 2.032 ETKDGv3 32
VMJ H5 -1.859 4.616 3.721 ETKDGv3 33
VMJ H6 -0.489 1.877 3.924 ETKDGv3 34
VMJ H7 -0.983 -0.238 2.880 ETKDGv3 35
VMJ H8 -0.844 -5.738 -1.172 ETKDGv3 36
VMJ H9 -2.062 -6.292 -2.385 ETKDGv3 37
VMJ H10 -0.777 -5.113 -2.872 ETKDGv3 38
VMJ H11 -4.607 -2.195 -2.540 ETKDGv3 39
VMJ H12 1.735 -1.928 -1.082 ETKDGv3 40
VMJ H13 4.192 -1.616 -0.861 ETKDGv3 41
VMJ H14 3.556 -2.930 0.195 ETKDGv3 42
VMJ H15 3.999 -1.338 0.916 ETKDGv3 43
VMJ H16 1.390 -0.156 -2.650 ETKDGv3 44
VMJ H17 1.417 2.188 -3.225 ETKDGv3 45
VMJ H18 2.144 3.927 -1.504 ETKDGv3 46
VMJ H19 2.808 3.228 0.720 ETKDGv3 47
VMJ H20 2.796 0.771 1.347 ETKDGv3 48
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