Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VMJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O11 O O1 N N N 0 -3.744 -1.112 0.084
2 C1 C C1 N N N 0 -2.923 -0.212 0.062
3 N2 N N1 N N N 0 -1.599 -0.482 0.038
4 C12 C C2 N Y N 0 -1.158 -1.812 0.038
5 C13 C C3 N Y N 0 -0.96 -2.479 -1.163
6 C14 C C4 N Y N 0 -0.525 -3.79 -1.16
7 C15 C C5 N Y N 0 -0.287 -4.438 0.038
8 C27 C C6 N N N 0 0.186 -5.869 0.037
9 O27 O O2 N N N 0 1.615 -5.898 0.013
10 C16 C C7 N Y N 0 -0.483 -3.777 1.236
11 C17 C C8 N Y N 0 -0.913 -2.464 1.239
12 C3 C C9 N N N 0 -0.688 0.537 0.014
13 N4 N N2 N N N 0 -1.053 1.799 0.014
14 C5 C C10 N Y N 0 -2.347 2.147 0.037
15 N9 N N3 N Y N 0 -3.003 3.338 0.043
16 C10 C C11 N N N 0 -2.378 4.662 0.023
17 N8 N N4 N Y N 0 -4.379 3.081 0.072
18 C7 C C12 N Y N 0 -4.583 1.794 0.084
19 C6 C C13 N Y N 0 -3.332 1.145 0.056
20 S18 S S1 N N N 0 1.03 0.145 -0.018
21 C19 C C14 R N N 0 1.732 1.813 -0.042
22 C26 C C15 N N N 0 1.342 2.512 -1.347
23 C20 C C16 N Y N 0 3.234 1.728 0.052
24 C21 C C17 N Y N 0 3.95 1.055 -0.919
25 C22 C C18 N Y N 0 5.328 0.981 -0.835
26 C23 C C19 N Y N 0 5.99 1.58 0.22
27 C24 C C20 N Y N 0 5.273 2.254 1.191
28 C25 C C21 N Y N 0 3.895 2.327 1.108
29 H1 H H1 N N N 0 -1.146 -1.974 -2.099
30 H2 H H2 N N N 0 -0.371 -4.31 -2.095
31 H3 H H3 N N N 0 -0.171 -6.371 0.937
32 H4 H H4 N N N 0 -0.202 -6.38 -0.843
33 H5 H H5 N N N 0 1.991 -6.789 0.011
34 H6 H H6 N N N 0 -0.296 -4.286 2.17
35 H7 H H7 N N N 0 -1.062 -1.946 2.175
36 H8 H H8 N N N 0 -2.243 4.985 -1.01
37 H9 H H9 N N N 0 -3.016 5.374 0.545
38 H10 H H10 N N N 0 -1.407 4.614 0.517
39 H11 H H11 N N N 0 -5.547 1.307 0.106
40 H12 H H12 N N N 0 1.347 2.382 0.804
41 H13 H H13 N N N 0 1.765 3.516 -1.362
42 H14 H H14 N N N 0 1.728 1.943 -2.193
43 H15 H H15 N N N 0 0.256 2.573 -1.415
44 H16 H H16 N N N 0 3.434 0.586 -1.744
45 H17 H H17 N N N 0 5.888 0.454 -1.594
46 H18 H H18 N N N 0 7.066 1.522 0.286
47 H19 H H19 N N N 0 5.79 2.723 2.016
48 H20 H H20 N N N 0 3.336 2.857 1.865