Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VIB    

Bonds between two atoms of the molecule

Total Number of Bonds: 36


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CM2 C2A C C sing 1.51 N N
2 CM2 HM21 C H sing 1.09 N N
3 CM2 HM22 C H sing 1.09 N N
4 CM2 HM23 C H sing 1.09 N N
5 N4A C4A N C sing 1.39 N N
6 N4A H4A1 N H sing 0.97 N N
7 N4A H4A2 N H sing 0.97 N N
8 CM4 C4 C C sing 1.51 N N
9 CM4 HM41 C H sing 1.09 N N
10 CM4 HM42 C H sing 1.09 N N
11 CM4 HM43 C H sing 1.09 N N
12 O1 C7 O C sing 1.43 N N
13 O1 HO1 O H sing 0.97 N N
14 C7 C6 C C sing 1.53 N N
15 C7 HC71 C H sing 1.09 N N
16 C7 HC72 C H sing 1.09 N N
17 C6 C5 C C sing 1.51 N N
18 C6 HC61 C H sing 1.09 N N
19 C6 HC62 C H sing 1.09 N N
20 C2 S1 C S sing 1.74 N Y
21 C2 N3 C N doub 1.31 N Y
22 C2 HC2 C H sing 1.08 N N
23 S1 C5 S C sing 1.79 N Y
24 C5 C4 C C doub 1.36 N Y
25 C4 N3 C N sing 1.32 N Y
26 N3 C7A N C sing 1.46 N N
27 C7A C5A C C sing 1.51 N N
28 C7A H7A1 C H sing 1.09 N N
29 C7A H7A2 C H sing 1.09 N N
30 C4A N3A C N sing 1.33 N Y
31 C4A C5A C C doub 1.4 N Y
32 N3A C2A N C doub 1.32 N Y
33 C2A N1A C N sing 1.32 N Y
34 N1A C6A N C doub 1.33 N Y
35 C6A C5A C C sing 1.38 N Y
36 C6A H6AC C H sing 1.08 N N