Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VIB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CM2 C CM2 N N N 0 5.038 1.578 1.354
2 N4A N N4A N N N 0 2.558 -2.23 -0.166
3 CM4 C CM4 N N N 0 -1.096 1.522 -1.063
4 O1 O O1 N N N 0 -5.653 1.65 0.322
5 C7 C C7 N N N 0 -4.614 0.769 -0.11
6 C6 C C6 N N N 0 -3.432 0.861 0.857
7 C2 C C2 N Y N 0 -0.615 -2.005 -0.142
8 S1 S S1 N Y N 0 -2.048 -1.783 0.814
9 C5 C C5 N Y N 0 -2.337 -0.068 0.401
10 C4 C C4 N Y N 0 -1.292 0.167 -0.433
11 N3 N N3 N Y N 1 -0.458 -0.82 -0.686
12 C7A C C7A N N N 0 0.673 -0.59 -1.588
13 C4A C C4A N Y N 0 2.72 -0.854 -0.132
14 N3A N N3A N Y N 0 3.73 -0.309 0.539
15 C2A C C2A N Y N 0 3.884 0.999 0.577
16 N1A N N1A N Y N 0 3.061 1.814 -0.05
17 C6A C C6A N Y N 0 2.034 1.346 -0.745
18 C5A C C5A N Y N 0 1.829 -0.018 -0.808
19 HM21 H 1HM2 N N N 0 4.726 1.767 2.381
20 HM22 H 2HM2 N N N 0 5.869 0.873 1.351
21 HM23 H 3HM2 N N N 0 5.354 2.513 0.892
22 H4A1 H 1H4A N N N 0 1.82 -2.619 -0.661
23 H4A2 H 2H4A N N N 0 3.181 -2.803 0.307
24 HM41 H 1HM4 N N N 0 -0.396 2.104 -0.464
25 HM42 H 2HM4 N N N 0 -0.699 1.4 -2.071
26 HM43 H 3HM4 N N N 0 -2.053 2.042 -1.111
27 HO1 H HO1 N N N 0 -6.377 1.562 -0.313
28 HC71 H 1HC7 N N N 0 -4.288 1.055 -1.11
29 HC72 H 2HC7 N N N 0 -4.99 -0.254 -0.129
30 HC61 H 1HC6 N N N 0 -3.758 0.575 1.857
31 HC62 H 2HC6 N N N 0 -3.057 1.884 0.876
32 HC2 H HC2 N N N 0 -0.009 -2.892 -0.26
33 H7A1 H 1H7A N N N 0 0.378 0.111 -2.368
34 H7A2 H 2H7A N N N 0 0.973 -1.534 -2.042
35 H6AC H CH6A N N N 0 1.365 2.024 -1.255