Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VHV    

Bonds between two atoms of the molecule

Total Number of Bonds: 77


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C3 C C doub 1.38 N Y
2 C2 C1 C C sing 1.38 N Y
3 C3 C4 C C sing 1.38 N Y
4 C1 C6 C C doub 1.38 N Y
5 C37 C35 C C sing 1.53 N N
6 O29 C9 O C doub 1.21 N N
7 C4 C5 C C doub 1.38 N Y
8 C4 C7 C C sing 1.51 N N
9 C6 C5 C C sing 1.38 N Y
10 C31 C30 C C sing 1.53 N N
11 C32 C30 C C sing 1.53 N N
12 C35 C34 C C sing 1.53 N N
13 C35 C36 C C sing 1.53 N N
14 C34 C14 C C sing 1.53 N N
15 C11 C30 C C sing 1.53 N N
16 C11 N10 C N sing 1.46 N N
17 C11 C12 C C sing 1.51 N N
18 C7 O8 C O sing 1.45 N N
19 C9 N10 C N sing 1.35 N N
20 C9 O8 C O sing 1.35 N N
21 N13 C12 N C sing 1.35 N N
22 N13 C14 N C sing 1.46 N N
23 O38 C15 O C doub 1.21 N N
24 C12 O33 C O doub 1.21 N N
25 C14 C15 C C sing 1.51 N N
26 C15 N16 C N sing 1.35 N N
27 N16 C17 N C sing 1.46 N N
28 C21 C22 C C sing 1.55 N N
29 C21 C20 C C sing 1.55 N N
30 C17 C8 C C sing 1.53 N N
31 C17 C19 C C sing 1.53 N N
32 C22 N23 C N sing 1.47 N N
33 C8 O9 C O sing 1.43 N N
34 C20 C19 C C sing 1.53 N N
35 C20 C24 C C sing 1.51 N N
36 N23 C24 N C sing 1.34 N N
37 C24 O26 C O doub 1.21 N N
38 C1 H1 C H sing 1.08 N N
39 C11 H2 C H sing 1.09 N N
40 C14 H3 C H sing 1.09 N N
41 C17 H4 C H sing 1.09 N N
42 C19 H5 C H sing 1.09 N N
43 C19 H6 C H sing 1.09 N N
44 C2 H7 C H sing 1.08 N N
45 C20 H8 C H sing 1.09 N N
46 C21 H9 C H sing 1.09 N N
47 C21 H10 C H sing 1.09 N N
48 C22 H11 C H sing 1.09 N N
49 C22 H12 C H sing 1.09 N N
50 C3 H13 C H sing 1.08 N N
51 C30 H14 C H sing 1.09 N N
52 C31 H15 C H sing 1.09 N N
53 C31 H16 C H sing 1.09 N N
54 C31 H17 C H sing 1.09 N N
55 C32 H18 C H sing 1.09 N N
56 C32 H19 C H sing 1.09 N N
57 C32 H20 C H sing 1.09 N N
58 C34 H21 C H sing 1.09 N N
59 C34 H22 C H sing 1.09 N N
60 C35 H23 C H sing 1.09 N N
61 C36 H24 C H sing 1.09 N N
62 C36 H25 C H sing 1.09 N N
63 C36 H26 C H sing 1.09 N N
64 C37 H27 C H sing 1.09 N N
65 C37 H28 C H sing 1.09 N N
66 C37 H29 C H sing 1.09 N N
67 C5 H30 C H sing 1.08 N N
68 C6 H31 C H sing 1.08 N N
69 C7 H32 C H sing 1.09 N N
70 C7 H33 C H sing 1.09 N N
71 C8 H34 C H sing 1.09 N N
72 C8 H35 C H sing 1.09 N N
73 N10 H36 N H sing 0.97 N N
74 N13 H37 N H sing 0.97 N N
75 N16 H38 N H sing 0.97 N N
76 N23 H39 N H sing 0.97 N N
77 O9 H40 O H sing 0.97 N N