data_VHV
#
_chem_comp.id VHV
_chem_comp.name
'N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C26 H40 N4 O6'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 504.619
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VHV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7JQ0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VHV C1 C1 C 0 1 Y N N N N N -16.424 10.746 -2.513 9.557 -1.096 1.945 C1 VHV 1
VHV C11 C2 C 0 1 N N S N N N -15.078 4.782 -0.452 1.747 0.611 -1.206 C11 VHV 2
VHV C12 C3 C 0 1 N N N N N N -15.235 3.508 0.317 0.547 0.697 -0.299 C12 VHV 3
VHV C14 C4 C 0 1 N N S N N N -15.665 1.153 0.329 -1.835 1.067 0.062 C14 VHV 4
VHV C15 C5 C 0 1 N N N N N N -14.297 0.600 0.579 -3.062 0.881 -0.792 C15 VHV 5
VHV C17 C6 C 0 1 N N S N N N -12.664 -0.217 2.153 -5.351 0.103 -1.098 C17 VHV 6
VHV C19 C7 C 0 1 N N N N N N -12.004 0.536 3.296 -6.223 -0.958 -0.425 C19 VHV 7
VHV C2 C8 C 0 1 Y N N N N N -17.287 9.926 -3.244 9.106 -1.856 0.882 C2 VHV 8
VHV C20 C9 C 0 1 N N S N N N -11.750 1.969 2.857 -5.446 -2.273 -0.330 C20 VHV 9
VHV C21 C10 C 0 1 N N N N N N -10.548 2.099 1.934 -6.318 -3.372 0.319 C21 VHV 10
VHV C22 C11 C 0 1 N N N N N N -9.903 3.412 2.377 -5.908 -3.262 1.805 C22 VHV 11
VHV C24 C12 C 0 1 N N N N N N -11.405 2.822 4.023 -4.271 -2.126 0.612 C24 VHV 12
VHV C3 C13 C 0 1 Y N N N N N -18.060 8.967 -2.585 8.127 -1.358 0.042 C3 VHV 13
VHV C30 C14 C 0 1 N N N N N N -13.679 5.336 -0.316 1.465 -0.388 -2.331 C30 VHV 14
VHV C31 C15 C 0 1 N N N N N N -13.634 6.693 -1.015 2.684 -0.475 -3.252 C31 VHV 15
VHV C32 C16 C 0 1 N N N N N N -12.644 4.350 -0.843 1.181 -1.766 -1.729 C32 VHV 16
VHV C34 C17 C 0 1 N N N N N N -16.466 0.164 -0.509 -1.939 2.389 0.825 C34 VHV 17
VHV C35 C18 C 0 1 N N N N N N -17.904 0.625 -0.725 -3.150 2.343 1.760 C35 VHV 18
VHV C36 C19 C 0 1 N N N N N N -18.673 0.718 0.591 -2.918 1.290 2.845 C36 VHV 19
VHV C37 C20 C 0 1 N N N N N N -18.626 -0.270 -1.742 -3.342 3.714 2.413 C37 VHV 20
VHV C4 C21 C 0 1 Y N N N N N -17.976 8.824 -1.197 7.598 -0.101 0.267 C4 VHV 21
VHV C5 C22 C 0 1 Y N N N N N -17.108 9.639 -0.486 8.048 0.659 1.331 C5 VHV 22
VHV C6 C23 C 0 1 Y N N N N N -16.330 10.591 -1.134 9.028 0.161 2.169 C6 VHV 23
VHV C7 C24 C 0 1 N N N N N N -18.794 7.804 -0.431 6.531 0.443 -0.649 C7 VHV 24
VHV C8 C25 C 0 1 N N N N N N -12.824 -1.701 2.455 -6.170 1.379 -1.306 C8 VHV 25
VHV C9 C26 C 0 1 N N N N N N -17.125 6.023 -0.392 4.154 0.478 -0.851 C9 VHV 26
VHV N10 N1 N 0 1 N N N N N N -15.940 5.771 0.127 2.910 0.165 -0.436 N10 VHV 27
VHV N13 N2 N 0 1 N N N N N N -15.567 2.419 -0.369 -0.645 1.089 -0.792 N13 VHV 28
VHV N16 N3 N 0 1 N N N N N N -13.979 0.320 1.842 -4.196 0.397 -0.247 N16 VHV 29
VHV N23 N4 N 0 1 N N N N N N -10.416 3.656 3.715 -4.555 -2.693 1.797 N23 VHV 30
VHV O26 O1 O 0 1 N N N N N N -11.985 2.728 5.091 -3.225 -1.576 0.338 O26 VHV 31
VHV O29 O2 O 0 1 N N N N N N -17.516 5.539 -1.441 4.310 1.132 -1.863 O29 VHV 32
VHV O33 O3 O 0 1 N N N N N N -15.083 3.496 1.532 0.653 0.414 0.876 O33 VHV 33
VHV O38 O4 O 0 1 N N N N N N -13.533 0.428 -0.359 -3.031 1.167 -1.970 O38 VHV 34
VHV O8 O5 O 0 1 N N N N N N -17.994 6.920 0.338 5.223 0.068 -0.143 O8 VHV 35
VHV O9 O6 O 0 1 N N N N N N -11.647 -2.175 3.113 -6.719 1.801 -0.056 O9 VHV 36
VHV H1 H1 H 0 1 N N N N N N -15.833 11.497 -3.016 10.319 -1.487 2.603 H1 VHV 37
VHV H2 H2 H 0 1 N N N N N N -15.317 4.618 -1.513 1.949 1.593 -1.635 H2 VHV 38
VHV H3 H3 H 0 1 N N N N N N -16.177 1.297 1.292 -1.757 0.243 0.771 H3 VHV 39
VHV H4 H4 H 0 1 N N N N N N -12.021 -0.119 1.266 -5.006 -0.268 -2.063 H4 VHV 40
VHV H5 H5 H 0 1 N N N N N N -12.667 0.530 4.174 -6.495 -0.624 0.576 H5 VHV 41
VHV H6 H6 H 0 1 N N N N N N -11.050 0.054 3.554 -7.127 -1.113 -1.014 H6 VHV 42
VHV H7 H7 H 0 1 N N N N N N -17.356 10.033 -4.316 9.519 -2.838 0.706 H7 VHV 43
VHV H8 H8 H 0 1 N N N N N N -12.645 2.364 2.353 -5.106 -2.586 -1.318 H8 VHV 44
VHV H9 H9 H 0 1 N N N N N N -10.863 2.151 0.881 -7.378 -3.156 0.190 H9 VHV 45
VHV H10 H10 H 0 1 N N N N N N -9.855 1.255 2.068 -6.070 -4.354 -0.082 H10 VHV 46
VHV H11 H11 H 0 1 N N N N N N -8.807 3.317 2.395 -6.592 -2.602 2.337 H11 VHV 47
VHV H12 H12 H 0 1 N N N N N N -10.189 4.230 1.699 -5.899 -4.249 2.267 H12 VHV 48
VHV H13 H13 H 0 1 N N N N N N -18.726 8.333 -3.151 7.775 -1.951 -0.789 H13 VHV 49
VHV H14 H14 H 0 1 N N N N N N -13.478 5.499 0.753 0.600 -0.056 -2.904 H14 VHV 50
VHV H15 H15 H 0 1 N N N N N N -14.404 7.352 -0.587 2.483 -1.187 -4.053 H15 VHV 51
VHV H16 H16 H 0 1 N N N N N N -12.642 7.147 -0.872 2.887 0.506 -3.680 H16 VHV 52
VHV H17 H17 H 0 1 N N N N N N -13.823 6.558 -2.090 3.549 -0.807 -2.679 H17 VHV 53
VHV H18 H18 H 0 1 N N N N N N -12.732 3.399 -0.298 0.313 -1.703 -1.073 H18 VHV 54
VHV H19 H19 H 0 1 N N N N N N -12.817 4.176 -1.915 0.980 -2.477 -2.530 H19 VHV 55
VHV H20 H20 H 0 1 N N N N N N -11.635 4.764 -0.697 2.046 -2.098 -1.156 H20 VHV 56
VHV H21 H21 H 0 1 N N N N N N -16.479 -0.808 0.006 -1.033 2.543 1.411 H21 VHV 57
VHV H22 H22 H 0 1 N N N N N N -15.978 0.053 -1.489 -2.058 3.209 0.117 H22 VHV 58
VHV H23 H23 H 0 1 N N N N N N -17.863 1.638 -1.153 -4.041 2.085 1.188 H23 VHV 59
VHV H24 H24 H 0 1 N N N N N N -18.125 1.366 1.291 -3.791 1.238 3.494 H24 VHV 60
VHV H25 H25 H 0 1 N N N N N N -19.671 1.142 0.403 -2.754 0.318 2.378 H25 VHV 61
VHV H26 H26 H 0 1 N N N N N N -18.777 -0.287 1.026 -2.042 1.562 3.434 H26 VHV 62
VHV H27 H27 H 0 1 N N N N N N -19.658 0.086 -1.877 -3.508 4.464 1.640 H27 VHV 63
VHV H28 H28 H 0 1 N N N N N N -18.096 -0.231 -2.705 -4.205 3.681 3.078 H28 VHV 64
VHV H29 H29 H 0 1 N N N N N N -18.641 -1.306 -1.373 -2.451 3.972 2.985 H29 VHV 65
VHV H30 H30 H 0 1 N N N N N N -17.036 9.532 0.586 7.635 1.641 1.506 H30 VHV 66
VHV H31 H31 H 0 1 N N N N N N -15.652 11.211 -0.566 9.377 0.753 3.002 H31 VHV 67
VHV H32 H32 H 0 1 N N N N N N -19.477 8.338 0.246 6.607 1.529 -0.691 H32 VHV 68
VHV H33 H33 H 0 1 N N N N N N -19.379 7.212 -1.150 6.666 0.030 -1.649 H33 VHV 69
VHV H34 H34 H 0 1 N N N N N N -13.697 -1.852 3.107 -5.525 2.164 -1.703 H34 VHV 70
VHV H35 H35 H 0 1 N N N N N N -12.969 -2.254 1.515 -6.978 1.182 -2.009 H35 VHV 71
VHV H36 H36 H 0 1 N N N N N N -15.638 6.276 0.935 2.786 -0.357 0.372 H36 VHV 72
VHV H37 H37 H 0 1 N N N N N N -15.746 2.473 -1.351 -0.714 1.387 -1.713 H37 VHV 73
VHV H38 H38 H 0 1 N N N N N N -14.642 0.479 2.573 -4.247 0.244 0.710 H38 VHV 74
VHV H39 H39 H 0 1 N N N N N N -10.068 4.364 4.329 -3.944 -2.723 2.550 H39 VHV 75
VHV H40 H40 H 0 1 N N N N N N -11.741 -3.101 3.304 -7.251 2.607 -0.112 H40 VHV 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VHV C2 C3 DOUB Y N 1
VHV C2 C1 SING Y N 2
VHV C3 C4 SING Y N 3
VHV C1 C6 DOUB Y N 4
VHV C37 C35 SING N N 5
VHV O29 C9 DOUB N N 6
VHV C4 C5 DOUB Y N 7
VHV C4 C7 SING N N 8
VHV C6 C5 SING Y N 9
VHV C31 C30 SING N N 10
VHV C32 C30 SING N N 11
VHV C35 C34 SING N N 12
VHV C35 C36 SING N N 13
VHV C34 C14 SING N N 14
VHV C11 C30 SING N N 15
VHV C11 N10 SING N N 16
VHV C11 C12 SING N N 17
VHV C7 O8 SING N N 18
VHV C9 N10 SING N N 19
VHV C9 O8 SING N N 20
VHV N13 C12 SING N N 21
VHV N13 C14 SING N N 22
VHV O38 C15 DOUB N N 23
VHV C12 O33 DOUB N N 24
VHV C14 C15 SING N N 25
VHV C15 N16 SING N N 26
VHV N16 C17 SING N N 27
VHV C21 C22 SING N N 28
VHV C21 C20 SING N N 29
VHV C17 C8 SING N N 30
VHV C17 C19 SING N N 31
VHV C22 N23 SING N N 32
VHV C8 O9 SING N N 33
VHV C20 C19 SING N N 34
VHV C20 C24 SING N N 35
VHV N23 C24 SING N N 36
VHV C24 O26 DOUB N N 37
VHV C1 H1 SING N N 38
VHV C11 H2 SING N N 39
VHV C14 H3 SING N N 40
VHV C17 H4 SING N N 41
VHV C19 H5 SING N N 42
VHV C19 H6 SING N N 43
VHV C2 H7 SING N N 44
VHV C20 H8 SING N N 45
VHV C21 H9 SING N N 46
VHV C21 H10 SING N N 47
VHV C22 H11 SING N N 48
VHV C22 H12 SING N N 49
VHV C3 H13 SING N N 50
VHV C30 H14 SING N N 51
VHV C31 H15 SING N N 52
VHV C31 H16 SING N N 53
VHV C31 H17 SING N N 54
VHV C32 H18 SING N N 55
VHV C32 H19 SING N N 56
VHV C32 H20 SING N N 57
VHV C34 H21 SING N N 58
VHV C34 H22 SING N N 59
VHV C35 H23 SING N N 60
VHV C36 H24 SING N N 61
VHV C36 H25 SING N N 62
VHV C36 H26 SING N N 63
VHV C37 H27 SING N N 64
VHV C37 H28 SING N N 65
VHV C37 H29 SING N N 66
VHV C5 H30 SING N N 67
VHV C6 H31 SING N N 68
VHV C7 H32 SING N N 69
VHV C7 H33 SING N N 70
VHV C8 H34 SING N N 71
VHV C8 H35 SING N N 72
VHV N10 H36 SING N N 73
VHV N13 H37 SING N N 74
VHV N16 H38 SING N N 75
VHV N23 H39 SING N N 76
VHV O9 H40 SING N N 77
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VHV SMILES ACDLabs 12.01 'c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CO)CC2C(=O)NCC2)=O)CC(C)C)=O'
VHV InChI InChI 1.03 'InChI=1S/C26H40N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,16-17,19-22,31H,10-15H2,1-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20-,21-,22-/m0/s1'
VHV InChIKey InChI 1.03 GLZAWCKOCLSXEU-CMOCDZPBSA-N
VHV SMILES_CANONICAL CACTVS 3.385 'CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O'
VHV SMILES CACTVS 3.385 'CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O'
VHV SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)[C@H](C(C)C)NC(=O)OCc2ccccc2'
VHV SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)C)NC(=O)OCc2ccccc2'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VHV 'SYSTEMATIC NAME' ACDLabs 12.01 'N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide'
VHV 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VHV 'Create component' 2020-08-13 RCSB
VHV 'Initial release' 2020-12-23 RCSB
VHV 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id VHV
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C8
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VHV C1 C 4.299 -10.530 1
VHV C11 C 6.897 -1.530 2
VHV C12 C 8.196 -0.780 3
VHV C14 C 9.495 1.470 4
VHV C15 C 9.495 2.970 5
VHV C17 C 8.196 5.220 6
VHV C19 C 6.897 5.970 7
VHV C2 C 5.598 -9.780 8
VHV C20 C 6.897 7.470 9
VHV C21 C 8.111 8.351 10
VHV C22 C 7.647 9.778 11
VHV C24 C 5.684 8.351 12
VHV C3 C 5.598 -8.280 13
VHV C30 C 5.598 -0.780 14
VHV C31 C 5.598 0.720 15
VHV C32 C 4.299 -1.530 16
VHV C34 C 10.794 0.720 17
VHV C35 C 12.093 1.470 18
VHV C36 C 12.093 2.970 19
VHV C37 C 13.392 0.720 20
VHV C4 C 4.299 -7.530 21
VHV C5 C 3.000 -8.280 22
VHV C6 C 3.000 -9.780 23
VHV C7 C 4.299 -6.030 24
VHV C8 C 9.495 5.970 25
VHV C9 C 5.598 -3.780 26
VHV N10 N 6.897 -3.030 27
VHV N13 N 8.196 0.720 28
VHV N16 N 8.196 3.720 29
VHV N23 N 6.147 9.778 30
VHV O26 O 4.257 7.888 31
VHV O29 O 4.299 -3.030 32
VHV O33 O 9.495 -1.530 33
VHV O38 O 10.794 3.720 34
VHV O8 O 5.598 -5.280 35
VHV O9 O 9.495 7.470 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VHV C2 C3 SINGLE NONE 1
VHV C2 C1 DOUBLE NONE 2
VHV C3 C4 DOUBLE NONE 3
VHV C1 C6 SINGLE NONE 4
VHV C37 C35 SINGLE NONE 5
VHV O29 C9 DOUBLE NONE 6
VHV C4 C5 SINGLE NONE 7
VHV C4 C7 SINGLE NONE 8
VHV C6 C5 DOUBLE NONE 9
VHV C31 C30 SINGLE NONE 10
VHV C32 C30 SINGLE NONE 11
VHV C35 C34 SINGLE NONE 12
VHV C35 C36 SINGLE NONE 13
VHV C14 C34 SINGLE BEGINDASH 14
VHV C11 C30 SINGLE NONE 15
VHV C11 N10 SINGLE BEGINWEDGE 16
VHV C11 C12 SINGLE NONE 17
VHV C7 O8 SINGLE NONE 18
VHV C9 N10 SINGLE NONE 19
VHV C9 O8 SINGLE NONE 20
VHV N13 C12 SINGLE NONE 21
VHV N13 C14 SINGLE NONE 22
VHV O38 C15 DOUBLE NONE 23
VHV C12 O33 DOUBLE NONE 24
VHV C14 C15 SINGLE NONE 25
VHV C15 N16 SINGLE NONE 26
VHV N16 C17 SINGLE NONE 27
VHV C21 C22 SINGLE NONE 28
VHV C21 C20 SINGLE NONE 29
VHV C17 C8 SINGLE BEGINWEDGE 30
VHV C17 C19 SINGLE NONE 31
VHV C22 N23 SINGLE NONE 32
VHV C8 O9 SINGLE NONE 33
VHV C20 C19 SINGLE BEGINWEDGE 34
VHV C20 C24 SINGLE NONE 35
VHV N23 C24 SINGLE NONE 36
VHV C24 O26 DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VHV MurckoScaffold S1 scaffold 'O=C(CNC(=O)CNC(=O)OCc1ccccc1)NCC[C@@H]1CCNC1=O' InChI=1S/C18H24N4O5/c23-15(19-8-6-14-7-9-20-17(14)25)10-21-16(24)11-22-18(26)27-12-13-4-2-1-3-5-13/h1-5,14H,6-12H2,(H,19,23)(H,20,25)(H,21,24)(H,22,26)/t14-/m1/s1 SIZVEDWHQBVTTP-CQSZACIVSA-N
VHV amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VHV peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
VHV phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VHV C1 S1 1
VHV C11 S1 1
VHV C12 S1 1
VHV C14 S1 1
VHV C15 S1 1
VHV C17 S1 1
VHV C19 S1 1
VHV C2 S1 1
VHV C20 S1 1
VHV C21 S1 1
VHV C22 S1 1
VHV C24 S1 1
VHV C3 S1 1
VHV C4 S1 1
VHV C5 S1 1
VHV C6 S1 1
VHV C7 S1 1
VHV C9 S1 1
VHV N10 S1 1
VHV N13 S1 1
VHV N16 S1 1
VHV N23 S1 1
VHV O26 S1 1
VHV O29 S1 1
VHV O33 S1 1
VHV O38 S1 1
VHV O8 S1 1
VHV N13 F1 1
VHV C12 F1 1
VHV O33 F1 1
VHV C11 F1 1
VHV N16 F1 2
VHV C15 F1 2
VHV O38 F1 2
VHV C14 F1 2
VHV N23 F1 3
VHV C24 F1 3
VHV O26 F1 3
VHV C20 F1 3
VHV O33 F2 1
VHV C12 F2 1
VHV C11 F2 1
VHV N10 F2 1
VHV O38 F2 2
VHV C15 F2 2
VHV C14 F2 2
VHV N13 F2 2
VHV C1 F3 1
VHV C2 F3 1
VHV C3 F3 1
VHV C4 F3 1
VHV C5 F3 1
VHV C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VHV
_pdbe_chem_comp_rdkit_properties.exactmw 504.295
_pdbe_chem_comp_rdkit_properties.amw 504.628
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.615
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 268.995
_pdbe_chem_comp_rdkit_properties.tpsa 145.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.417
_pdbe_chem_comp_rdkit_properties.CrippenMR 134.259
_pdbe_chem_comp_rdkit_properties.chi0v 17.238
_pdbe_chem_comp_rdkit_properties.chi1v 8.718
_pdbe_chem_comp_rdkit_properties.chi2v 3.148
_pdbe_chem_comp_rdkit_properties.chi3v 3.148
_pdbe_chem_comp_rdkit_properties.chi4v 1.801
_pdbe_chem_comp_rdkit_properties.chi0n 57.238
_pdbe_chem_comp_rdkit_properties.chi1n 28.415
_pdbe_chem_comp_rdkit_properties.chi2n 3.148
_pdbe_chem_comp_rdkit_properties.chi3n 3.148
_pdbe_chem_comp_rdkit_properties.chi4n 1.801
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.140
_pdbe_chem_comp_rdkit_properties.kappa1 6.114
_pdbe_chem_comp_rdkit_properties.kappa2 14.427
_pdbe_chem_comp_rdkit_properties.kappa3 9.485
_pdbe_chem_comp_rdkit_properties.Phi 2.450
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VHV UniChem PubChem 154702382
VHV UniChem BindingDb 423467
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VHV C1 6.426 1.738 -4.882 ETKDGv3 1
VHV C11 1.546 0.300 2.016 ETKDGv3 2
VHV C12 0.740 -0.827 1.410 ETKDGv3 3
VHV C14 -0.742 -1.660 -0.526 ETKDGv3 4
VHV C15 -1.992 -1.741 0.318 ETKDGv3 5
VHV C17 -4.314 -0.860 0.869 ETKDGv3 6
VHV C19 -5.089 0.474 0.760 ETKDGv3 7
VHV C2 7.058 2.098 -3.758 ETKDGv3 8
VHV C20 -4.307 1.670 1.343 ETKDGv3 9
VHV C21 -4.083 1.576 2.869 ETKDGv3 10
VHV C22 -4.410 2.962 3.453 ETKDGv3 11
VHV C24 -5.060 2.940 1.209 ETKDGv3 12
VHV C3 6.718 1.448 -2.475 ETKDGv3 13
VHV C30 0.649 1.415 2.629 ETKDGv3 14
VHV C31 -0.378 1.996 1.642 ETKDGv3 15
VHV C32 -0.067 0.917 3.894 ETKDGv3 16
VHV C34 -0.116 -3.058 -0.770 ETKDGv3 17
VHV C35 0.951 -3.142 -1.892 ETKDGv3 18
VHV C36 0.410 -2.728 -3.267 ETKDGv3 19
VHV C37 2.238 -2.379 -1.558 ETKDGv3 20
VHV C4 5.786 0.478 -2.434 ETKDGv3 21
VHV C5 5.078 0.095 -3.681 ETKDGv3 22
VHV C6 5.385 0.690 -4.841 ETKDGv3 23
VHV C7 5.398 -0.160 -1.135 ETKDGv3 24
VHV C8 -5.184 -2.032 0.388 ETKDGv3 25
VHV C9 3.611 0.105 0.556 ETKDGv3 26
VHV N10 2.481 0.848 1.025 ETKDGv3 27
VHV N13 0.211 -0.719 0.074 ETKDGv3 28
VHV N16 -3.066 -0.813 0.097 ETKDGv3 29
VHV N23 -5.134 3.667 2.415 ETKDGv3 30
VHV O26 -5.532 3.374 0.125 ETKDGv3 31
VHV O29 3.972 -0.948 1.151 ETKDGv3 32
VHV O33 0.511 -1.853 2.106 ETKDGv3 33
VHV O38 -2.077 -2.595 1.243 ETKDGv3 34
VHV O8 4.297 0.548 -0.577 ETKDGv3 35
VHV O9 -5.466 -1.902 -0.979 ETKDGv3 36
VHV H1 6.673 2.214 -5.822 ETKDGv3 37
VHV H2 2.157 -0.118 2.848 ETKDGv3 38
VHV H3 -1.058 -1.256 -1.510 ETKDGv3 39
VHV H4 -4.072 -1.036 1.940 ETKDGv3 40
VHV H5 -5.313 0.677 -0.310 ETKDGv3 41
VHV H6 -6.063 0.382 1.292 ETKDGv3 42
VHV H7 7.818 2.869 -3.786 ETKDGv3 43
VHV H8 -3.337 1.794 0.819 ETKDGv3 44
VHV H9 -4.767 0.828 3.329 ETKDGv3 45
VHV H10 -3.037 1.285 3.100 ETKDGv3 46
VHV H11 -3.474 3.513 3.689 ETKDGv3 47
VHV H12 -5.037 2.876 4.367 ETKDGv3 48
VHV H13 7.227 1.765 -1.573 ETKDGv3 49
VHV H14 1.317 2.248 2.943 ETKDGv3 50
VHV H15 -1.118 1.224 1.349 ETKDGv3 51
VHV H16 0.116 2.386 0.730 ETKDGv3 52
VHV H17 -0.926 2.838 2.116 ETKDGv3 53
VHV H18 -0.636 1.748 4.364 ETKDGv3 54
VHV H19 0.671 0.546 4.636 ETKDGv3 55
VHV H20 -0.775 0.097 3.650 ETKDGv3 56
VHV H21 0.322 -3.453 0.171 ETKDGv3 57
VHV H22 -0.934 -3.762 -1.042 ETKDGv3 58
VHV H23 1.232 -4.217 -1.970 ETKDGv3 59
VHV H24 -0.556 -3.237 -3.473 ETKDGv3 60
VHV H25 1.131 -3.023 -4.059 ETKDGv3 61
VHV H26 0.264 -1.629 -3.329 ETKDGv3 62
VHV H27 3.040 -2.667 -2.271 ETKDGv3 63
VHV H28 2.582 -2.633 -0.533 ETKDGv3 64
VHV H29 2.089 -1.283 -1.639 ETKDGv3 65
VHV H30 4.309 -0.667 -3.657 ETKDGv3 66
VHV H31 4.869 0.408 -5.749 ETKDGv3 67
VHV H32 5.112 -1.219 -1.316 ETKDGv3 68
VHV H33 6.250 -0.152 -0.419 ETKDGv3 69
VHV H34 -6.133 -2.058 0.969 ETKDGv3 70
VHV H35 -4.648 -2.991 0.567 ETKDGv3 71
VHV H36 2.314 1.788 0.603 ETKDGv3 72
VHV H37 0.447 0.132 -0.483 ETKDGv3 73
VHV H38 -2.950 -0.087 -0.646 ETKDGv3 74
VHV H39 -5.527 4.630 2.509 ETKDGv3 75
VHV H40 -6.028 -2.684 -1.220 ETKDGv3 76
#