Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VHV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 9.557 -1.096 1.945
2 C11 C C2 S N N 0 1.747 0.611 -1.206
3 C12 C C3 N N N 0 0.547 0.697 -0.299
4 C14 C C4 S N N 0 -1.835 1.067 0.062
5 C15 C C5 N N N 0 -3.062 0.881 -0.792
6 C17 C C6 S N N 0 -5.351 0.103 -1.098
7 C19 C C7 N N N 0 -6.223 -0.958 -0.425
8 C2 C C8 N Y N 0 9.106 -1.856 0.882
9 C20 C C9 S N N 0 -5.446 -2.273 -0.33
10 C21 C C10 N N N 0 -6.318 -3.372 0.319
11 C22 C C11 N N N 0 -5.908 -3.262 1.805
12 C24 C C12 N N N 0 -4.271 -2.126 0.612
13 C3 C C13 N Y N 0 8.127 -1.358 0.042
14 C30 C C14 N N N 0 1.465 -0.388 -2.331
15 C31 C C15 N N N 0 2.684 -0.475 -3.252
16 C32 C C16 N N N 0 1.181 -1.766 -1.729
17 C34 C C17 N N N 0 -1.939 2.389 0.825
18 C35 C C18 N N N 0 -3.15 2.343 1.76
19 C36 C C19 N N N 0 -2.918 1.29 2.845
20 C37 C C20 N N N 0 -3.342 3.714 2.413
21 C4 C C21 N Y N 0 7.598 -0.101 0.267
22 C5 C C22 N Y N 0 8.048 0.659 1.331
23 C6 C C23 N Y N 0 9.028 0.161 2.169
24 C7 C C24 N N N 0 6.531 0.443 -0.649
25 C8 C C25 N N N 0 -6.17 1.379 -1.306
26 C9 C C26 N N N 0 4.154 0.478 -0.851
27 N10 N N1 N N N 0 2.91 0.165 -0.436
28 N13 N N2 N N N 0 -0.645 1.089 -0.792
29 N16 N N3 N N N 0 -4.196 0.397 -0.247
30 N23 N N4 N N N 0 -4.555 -2.693 1.797
31 O26 O O1 N N N 0 -3.225 -1.576 0.338
32 O29 O O2 N N N 0 4.31 1.132 -1.863
33 O33 O O3 N N N 0 0.653 0.414 0.876
34 O38 O O4 N N N 0 -3.031 1.167 -1.97
35 O8 O O5 N N N 0 5.223 0.068 -0.143
36 O9 O O6 N N N 0 -6.719 1.801 -0.056
37 H1 H H1 N N N 0 10.319 -1.487 2.603
38 H2 H H2 N N N 0 1.949 1.593 -1.635
39 H3 H H3 N N N 0 -1.757 0.243 0.771
40 H4 H H4 N N N 0 -5.006 -0.268 -2.063
41 H5 H H5 N N N 0 -6.495 -0.624 0.576
42 H6 H H6 N N N 0 -7.127 -1.113 -1.014
43 H7 H H7 N N N 0 9.519 -2.838 0.706
44 H8 H H8 N N N 0 -5.106 -2.586 -1.318
45 H9 H H9 N N N 0 -7.378 -3.156 0.19
46 H10 H H10 N N N 0 -6.07 -4.354 -0.082
47 H11 H H11 N N N 0 -6.592 -2.602 2.337
48 H12 H H12 N N N 0 -5.899 -4.249 2.267
49 H13 H H13 N N N 0 7.775 -1.951 -0.789
50 H14 H H14 N N N 0 0.6 -0.056 -2.904
51 H15 H H15 N N N 0 2.483 -1.187 -4.053
52 H16 H H16 N N N 0 2.887 0.506 -3.68
53 H17 H H17 N N N 0 3.549 -0.807 -2.679
54 H18 H H18 N N N 0 0.313 -1.703 -1.073
55 H19 H H19 N N N 0 0.98 -2.477 -2.53
56 H20 H H20 N N N 0 2.046 -2.098 -1.156
57 H21 H H21 N N N 0 -1.033 2.543 1.411
58 H22 H H22 N N N 0 -2.058 3.209 0.117
59 H23 H H23 N N N 0 -4.041 2.085 1.188
60 H24 H H24 N N N 0 -3.791 1.238 3.494
61 H25 H H25 N N N 0 -2.754 0.318 2.378
62 H26 H H26 N N N 0 -2.042 1.562 3.434
63 H27 H H27 N N N 0 -3.508 4.464 1.64
64 H28 H H28 N N N 0 -4.205 3.681 3.078
65 H29 H H29 N N N 0 -2.451 3.972 2.985
66 H30 H H30 N N N 0 7.635 1.641 1.506
67 H31 H H31 N N N 0 9.377 0.753 3.002
68 H32 H H32 N N N 0 6.607 1.529 -0.691
69 H33 H H33 N N N 0 6.666 0.03 -1.649
70 H34 H H34 N N N 0 -5.525 2.164 -1.703
71 H35 H H35 N N N 0 -6.978 1.182 -2.009
72 H36 H H36 N N N 0 2.786 -0.357 0.372
73 H37 H H37 N N N 0 -0.714 1.387 -1.713
74 H38 H H38 N N N 0 -4.247 0.244 0.71
75 H39 H H39 N N N 0 -3.944 -2.723 2.55
76 H40 H H40 N N N 0 -7.251 2.607 -0.112