Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UTP    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PA O1A P O doub 1.48 N N
2 PA O2A P O sing 1.61 N N
3 PA O3A P O sing 1.61 N N
4 PA O5' P O sing 1.61 N N
5 O2A H2A O H sing 0.97 N N
6 O3A PB O P sing 1.61 N N
7 O5' C5' O C sing 1.43 N N
8 PB O1B P O sing 1.61 N N
9 PB O2B P O doub 1.48 N N
10 PB O3B P O sing 1.61 N N
11 O1B H1B O H sing 0.97 N N
12 O3B PG O P sing 1.61 N N
13 PG O1G P O sing 1.61 N N
14 PG O2G P O doub 1.48 N N
15 PG O3G P O sing 1.61 N N
16 O1G H1G O H sing 0.97 N N
17 O3G H3G O H sing 0.97 N N
18 C5' C4' C C sing 1.53 N N
19 C5' H5'1 C H sing 1.09 N N
20 C5' H5'2 C H sing 1.09 N N
21 C4' O4' C O sing 1.45 N N
22 C4' C3' C C sing 1.54 N N
23 C4' H4' C H sing 1.09 N N
24 O4' C1' O C sing 1.44 N N
25 C1' C2' C C sing 1.54 N N
26 C1' N1 C N sing 1.46 N N
27 C1' H1' C H sing 1.09 N N
28 C2' O2' C O sing 1.43 N N
29 C2' C3' C C sing 1.55 N N
30 C2' H2' C H sing 1.09 N N
31 O2' HA O H sing 0.97 N N
32 C3' O3' C O sing 1.43 N N
33 C3' H3' C H sing 1.09 N N
34 O3' HB O H sing 0.97 N N
35 N1 C6 N C sing 1.37 N Y
36 N1 C2 N C sing 1.35 N Y
37 C6 C5 C C doub 1.35 N Y
38 C6 H6 C H sing 1.08 N N
39 C2 O2 C O doub 1.22 N N
40 C2 N3 C N sing 1.35 N Y
41 N3 C4 N C sing 1.35 N Y
42 N3 H3 N H sing 0.97 N N
43 C4 O4 C O doub 1.22 N N
44 C4 C5 C C sing 1.42 N Y
45 C5 H5 C H sing 1.08 N N