Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UTP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA R N N 0 -1.462 0.132 -0.265
2 O1A O O1A N N N 0 -2.059 1.39 -0.766
3 O2A O O2A N N N 0 -1.132 -0.838 -1.508
4 O3A O O3A N N N 0 -2.501 -0.599 0.724
5 O5' O O5* N N N 0 -0.104 0.463 0.533
6 PB P PB S N N 0 -3.943 -0.542 0.009
7 O1B O O1B N N N 0 -4.037 -1.701 -1.104
8 O2B O O2B N N N 0 -4.121 0.778 -0.637
9 O3B O O3B N N N 0 -5.097 -0.76 1.11
10 PG P PG N N N 0 -6.482 -0.302 0.43
11 O1G O O1G N N N 0 -7.03 -1.481 -0.52
12 O2G O O2G N N N 0 -6.256 0.917 -0.378
13 O3G O O3G N N N 0 -7.567 0.009 1.578
14 C5' C C5* N N N 0 0.726 1.211 -0.358
15 C4' C C4* R N N 0 2.041 1.56 0.343
16 O4' O O4* N N N 0 2.808 0.361 0.601
17 C1' C C1* R N N 0 4.168 0.809 0.786
18 C2' C C2* R N N 0 4.372 1.904 -0.284
19 O2' O O2* N N N 0 5.181 2.965 0.229
20 C3' C C3* S N N 0 2.942 2.41 -0.58
21 O3' O O3* N N N 0 2.824 3.796 -0.257
22 N1 N N1 N Y N 0 5.105 -0.296 0.569
23 C6 C C6 N Y N 0 6.07 -0.56 1.502
24 C2 C C2 N Y N 0 5.006 -1.045 -0.545
25 O2 O O2 N N N 0 4.141 -0.793 -1.361
26 N3 N N3 N Y N 0 5.856 -2.064 -0.772
27 C4 C C4 N Y N 0 6.821 -2.356 0.124
28 O4 O O4 N N N 0 7.588 -3.28 -0.078
29 C5 C C5 N Y N 0 6.934 -1.579 1.302
30 H2A H H2A N N N 0 -0.746 -1.644 -1.139
31 H1B H H1B N N N 0 -3.916 -2.542 -0.643
32 H1G H H1G N N N 0 -7.164 -2.255 0.044
33 H3G H H3G N N N 0 -8.38 0.279 1.13
34 H5'1 H 1H5* N N N 0 0.215 2.128 -0.648
35 H5'2 H 2H5* N N N 0 0.935 0.615 -1.246
36 H4' H H4* N N N 0 1.845 2.092 1.274
37 H1' H H1* N N N 0 4.299 1.225 1.785
38 H2' H H2* N N N 0 4.821 1.482 -1.183
39 HA H HA N N N 0 5.221 3.643 -0.459
40 H3' H H3* N N N 0 2.686 2.239 -1.626
41 HB H HB N N N 0 3.428 4.273 -0.842
42 H6 H H6 N N N 0 6.141 0.044 2.395
43 H3 H H3 N N N 0 5.773 -2.591 -1.581
44 H5 H H5 N N N 0 7.7 -1.798 2.031