data_UTP
#
_chem_comp.id UTP
_chem_comp.name "URIDINE 5'-TRIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H15 N2 O15 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-03-27
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 484.141
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UTP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GX6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UTP PA PA P 0 1 N N R N N N 18.309 26.365 27.441 -1.462 0.132 -0.265 PA UTP 1
UTP O1A O1A O 0 1 N N N N N N 19.058 25.478 26.514 -2.059 1.390 -0.766 O1A UTP 2
UTP O2A O2A O 0 1 N N N N N N 18.460 26.206 28.913 -1.132 -0.838 -1.508 O2A UTP 3
UTP O3A O3A O 0 1 N N N N N N 16.725 26.328 27.094 -2.501 -0.599 0.724 O3A UTP 4
UTP "O5'" O5* O 0 1 N N N N N N 18.566 27.884 27.076 -0.104 0.463 0.533 "O5'" UTP 5
UTP PB PB P 0 1 N N S N N N 15.502 25.636 27.821 -3.943 -0.542 0.009 PB UTP 6
UTP O1B O1B O 0 1 N N N N N N 15.755 25.133 29.161 -4.037 -1.701 -1.104 O1B UTP 7
UTP O2B O2B O 0 1 N N N N N N 14.962 24.729 26.843 -4.121 0.778 -0.637 O2B UTP 8
UTP O3B O3B O 0 1 N N N N N N 14.560 26.910 27.985 -5.097 -0.760 1.110 O3B UTP 9
UTP PG PG P 0 1 N N N N N N 13.146 27.070 28.678 -6.482 -0.302 0.430 PG UTP 10
UTP O1G O1G O 0 1 N N N N N N 12.961 28.560 28.983 -7.030 -1.481 -0.520 O1G UTP 11
UTP O2G O2G O 0 1 N N N N N N 12.192 26.542 27.637 -6.256 0.917 -0.378 O2G UTP 12
UTP O3G O3G O 0 1 N N N N N N 13.123 26.239 29.952 -7.567 0.009 1.578 O3G UTP 13
UTP "C5'" C5* C 0 1 N N N N N N 17.953 28.908 27.837 0.726 1.211 -0.358 "C5'" UTP 14
UTP "C4'" C4* C 0 1 N N R N N N 17.799 30.142 26.999 2.041 1.560 0.343 "C4'" UTP 15
UTP "O4'" O4* O 0 1 N N N N N N 16.765 29.918 26.002 2.808 0.361 0.601 "O4'" UTP 16
UTP "C1'" C1* C 0 1 N N R N N N 16.025 31.105 25.856 4.168 0.809 0.786 "C1'" UTP 17
UTP "C2'" C2* C 0 1 N N R N N N 15.960 31.654 27.282 4.372 1.904 -0.284 "C2'" UTP 18
UTP "O2'" O2* O 0 1 N N N N N N 15.624 33.021 27.293 5.181 2.965 0.229 "O2'" UTP 19
UTP "C3'" C3* C 0 1 N N S N N N 17.378 31.376 27.787 2.942 2.410 -0.580 "C3'" UTP 20
UTP "O3'" O3* O 0 1 N N N N N N 18.272 32.452 27.523 2.824 3.796 -0.257 "O3'" UTP 21
UTP N1 N1 N 0 1 Y N N N N N 14.707 30.780 25.282 5.105 -0.296 0.569 N1 UTP 22
UTP C6 C6 C 0 1 Y N N N N N 13.921 29.782 25.809 6.070 -0.560 1.502 C6 UTP 23
UTP C2 C2 C 0 1 Y N N N N N 14.268 31.537 24.204 5.006 -1.045 -0.545 C2 UTP 24
UTP O2 O2 O 0 1 N N N N N N 14.958 32.393 23.675 4.141 -0.793 -1.361 O2 UTP 25
UTP N3 N3 N 0 1 Y N N N N N 12.997 31.244 23.764 5.856 -2.064 -0.772 N3 UTP 26
UTP C4 C4 C 0 1 Y N N N N N 12.146 30.276 24.267 6.821 -2.356 0.124 C4 UTP 27
UTP O4 O4 O 0 1 N N N N N N 10.996 30.178 23.817 7.588 -3.280 -0.078 O4 UTP 28
UTP C5 C5 C 0 1 Y N N N N N 12.692 29.509 25.350 6.934 -1.579 1.302 C5 UTP 29
UTP H2A H2A H 0 1 N N N N N N 19.383 26.172 29.135 -0.746 -1.644 -1.139 H2A UTP 30
UTP H1B H1B H 0 1 N N N N N N 16.690 25.023 29.287 -3.916 -2.542 -0.643 H1B UTP 31
UTP H1G H1G H 0 1 N N N N N N 12.034 28.758 29.046 -7.164 -2.255 0.044 H1G UTP 32
UTP H3G H3G H 0 1 N N N N N N 14.014 26.066 30.234 -8.380 0.279 1.130 H3G UTP 33
UTP "H5'1" 1H5* H 0 0 N N N N N N 18.582 29.138 28.710 0.215 2.128 -0.648 "H5'1" UTP 34
UTP "H5'2" 2H5* H 0 0 N N N N N N 16.962 28.569 28.172 0.935 0.615 -1.246 "H5'2" UTP 35
UTP "H4'" H4* H 0 1 N N N N N N 18.791 30.329 26.562 1.845 2.092 1.274 "H4'" UTP 36
UTP "H1'" H1* H 0 1 N N N N N N 16.459 31.850 25.173 4.299 1.225 1.785 "H1'" UTP 37
UTP "H2'" H2* H 0 1 N N N N N N 15.184 31.197 27.914 4.821 1.482 -1.183 "H2'" UTP 38
UTP HA HA H 0 1 N N N N N N 14.679 33.115 27.295 5.221 3.643 -0.459 HA UTP 39
UTP "H3'" H3* H 0 1 N N N N N N 17.401 31.241 28.878 2.686 2.239 -1.626 "H3'" UTP 40
UTP HB HB H 0 1 N N N N N N 17.782 33.264 27.464 3.428 4.273 -0.842 HB UTP 41
UTP H6 H6 H 0 1 N N N N N N 14.311 29.194 26.627 6.141 0.044 2.395 H6 UTP 42
UTP H3 H3 H 0 1 N N N N N N 12.652 31.789 23.000 5.773 -2.591 -1.581 H3 UTP 43
UTP H5 H5 H 0 1 N N N N N N 12.113 28.713 25.795 7.700 -1.798 2.031 H5 UTP 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UTP PA O1A DOUB N N 1
UTP PA O2A SING N N 2
UTP PA O3A SING N N 3
UTP PA "O5'" SING N N 4
UTP O2A H2A SING N N 5
UTP O3A PB SING N N 6
UTP "O5'" "C5'" SING N N 7
UTP PB O1B SING N N 8
UTP PB O2B DOUB N N 9
UTP PB O3B SING N N 10
UTP O1B H1B SING N N 11
UTP O3B PG SING N N 12
UTP PG O1G SING N N 13
UTP PG O2G DOUB N N 14
UTP PG O3G SING N N 15
UTP O1G H1G SING N N 16
UTP O3G H3G SING N N 17
UTP "C5'" "C4'" SING N N 18
UTP "C5'" "H5'1" SING N N 19
UTP "C5'" "H5'2" SING N N 20
UTP "C4'" "O4'" SING N N 21
UTP "C4'" "C3'" SING N N 22
UTP "C4'" "H4'" SING N N 23
UTP "O4'" "C1'" SING N N 24
UTP "C1'" "C2'" SING N N 25
UTP "C1'" N1 SING N N 26
UTP "C1'" "H1'" SING N N 27
UTP "C2'" "O2'" SING N N 28
UTP "C2'" "C3'" SING N N 29
UTP "C2'" "H2'" SING N N 30
UTP "O2'" HA SING N N 31
UTP "C3'" "O3'" SING N N 32
UTP "C3'" "H3'" SING N N 33
UTP "O3'" HB SING N N 34
UTP N1 C6 SING Y N 35
UTP N1 C2 SING Y N 36
UTP C6 C5 DOUB Y N 37
UTP C6 H6 SING N N 38
UTP C2 O2 DOUB N N 39
UTP C2 N3 SING Y N 40
UTP N3 C4 SING Y N 41
UTP N3 H3 SING N N 42
UTP C4 O4 DOUB N N 43
UTP C4 C5 SING Y N 44
UTP C5 H5 SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UTP SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
UTP SMILES_CANONICAL CACTVS 3.341 O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
UTP SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
UTP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)O
UTP SMILES "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
UTP InChI InChI 1.03 InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
UTP InChIKey InChI 1.03 PGAVKCOVUIYSFO-XVFCMESISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UTP "SYSTEMATIC NAME" ACDLabs 10.04 "uridine 5'-(tetrahydrogen triphosphate)"
UTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UTP 'Create component' 2002-03-27 RCSB
UTP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id UTP
_pdbe_chem_comp_drugbank_details.drugbank_id DB04005
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Uridine 5'-triphosphate"
_pdbe_chem_comp_drugbank_details.description
'Uridine 5'-(tetrahydrogen triphosphate). A uracil nucleotide containing three phosphate groups esterified to the sugar moiety.'
_pdbe_chem_comp_drugbank_details.cas_number 63-39-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id UTP
_pdbe_chem_comp_synonyms.name 'Uridine triphosphate'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id UTP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04005
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine ribonucleoside triphosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine ribonucleoside triphosphates. These are pyrimidine ribobucleotides with triphosphate group  linked to the ribose moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
UTP DB04005 'P2Y purinoceptor 2' Humans P41231 yes 1
UTP DB04005 'P2Y purinoceptor 6' Humans Q15077 yes 2
UTP DB04005 'P2Y purinoceptor 4' Humans P51582 yes 3
UTP DB04005 'P2Y purinoceptor 11' Humans Q96G91 yes 4
UTP DB04005 'Uridine-cytidine kinase 2' Humans Q9BZX2 unknown 5
UTP DB04005 'Genome polyprotein' HCV P26662 unknown 6
UTP DB04005 'Genome polyprotein' HCV P26663 unknown 7
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UTP PA P 10.336 -3.626 1
UTP O1A O 11.550 -2.744 2
UTP O2A O 9.123 -4.508 3
UTP O3A O 11.218 -4.839 4
UTP "O5'" O 9.455 -2.412 5
UTP PB P 12.710 -4.683 6
UTP O1B O 12.867 -6.174 7
UTP O2B O 12.553 -3.191 8
UTP O3B O 14.202 -4.526 9
UTP PG P 15.083 -5.739 10
UTP O1G O 15.965 -6.953 11
UTP O2G O 16.297 -4.858 12
UTP O3G O 13.870 -6.621 13
UTP "C5'" C 7.963 -2.569 14
UTP "C4'" C 7.081 -1.356 15
UTP "O4'" O 7.545 0.071 16
UTP "C1'" C 6.331 0.953 17
UTP "C2'" C 5.118 0.071 18
UTP "O2'" O 3.691 0.535 19
UTP "C3'" C 5.581 -1.356 20
UTP "O3'" O 4.699 -2.569 21
UTP N1 N 6.331 2.453 22
UTP C6 C 5.032 3.203 23
UTP C2 C 7.630 3.203 24
UTP O2 O 8.929 2.453 25
UTP N3 N 7.630 4.703 26
UTP C4 C 6.331 5.453 27
UTP O4 O 6.331 6.953 28
UTP C5 C 5.032 4.703 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UTP PA O1A DOUBLE NONE 1
UTP PA O2A SINGLE BEGINWEDGE 2
UTP PA O3A SINGLE NONE 3
UTP PA "O5'" SINGLE NONE 4
UTP O3A PB SINGLE NONE 5
UTP "O5'" "C5'" SINGLE NONE 6
UTP PB O1B SINGLE BEGINWEDGE 7
UTP PB O2B DOUBLE NONE 8
UTP PB O3B SINGLE NONE 9
UTP O3B PG SINGLE NONE 10
UTP PG O1G SINGLE NONE 11
UTP PG O2G DOUBLE NONE 12
UTP PG O3G SINGLE NONE 13
UTP "C4'" "C5'" SINGLE BEGINDASH 14
UTP "C4'" "O4'" SINGLE NONE 15
UTP "C4'" "C3'" SINGLE NONE 16
UTP "O4'" "C1'" SINGLE NONE 17
UTP "C1'" "C2'" SINGLE NONE 18
UTP "C1'" N1 SINGLE BEGINDASH 19
UTP "C2'" "O2'" SINGLE BEGINWEDGE 20
UTP "C2'" "C3'" SINGLE NONE 21
UTP "C3'" "O3'" SINGLE BEGINWEDGE 22
UTP N1 C6 SINGLE NONE 23
UTP N1 C2 SINGLE NONE 24
UTP C6 C5 DOUBLE NONE 25
UTP C2 O2 DOUBLE NONE 26
UTP C2 N3 SINGLE NONE 27
UTP N3 C4 SINGLE NONE 28
UTP C4 O4 DOUBLE NONE 29
UTP C4 C5 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UTP MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
UTP phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
UTP pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
UTP ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UTP "C4'" S1 1
UTP "O4'" S1 1
UTP "C1'" S1 1
UTP "C2'" S1 1
UTP "C3'" S1 1
UTP N1 S1 1
UTP C6 S1 1
UTP C2 S1 1
UTP O2 S1 1
UTP N3 S1 1
UTP C4 S1 1
UTP O4 S1 1
UTP C5 S1 1
UTP O2A F1 1
UTP PA F1 1
UTP O1A F1 1
UTP O3A F1 1
UTP "O5'" F1 1
UTP O3A F1 2
UTP PB F1 2
UTP O2B F1 2
UTP O1B F1 2
UTP O3B F1 2
UTP O3B F1 3
UTP PG F1 3
UTP O2G F1 3
UTP O1G F1 3
UTP O3G F1 3
UTP C5 F2 1
UTP C6 F2 1
UTP N1 F2 1
UTP C2 F2 1
UTP N3 F2 1
UTP C4 F2 1
UTP "C2'" F3 1
UTP "C3'" F3 1
UTP "C4'" F3 1
UTP "O4'" F3 1
UTP "C1'" F3 1
UTP "C5'" F3 1
UTP "O5'" F3 1
UTP "O3'" F3 1
UTP "O2'" F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UTP
_pdbe_chem_comp_rdkit_properties.exactmw 483.969
_pdbe_chem_comp_rdkit_properties.amw 484.140
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 44
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 180.744
_pdbe_chem_comp_rdkit_properties.tpsa 264.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.701
_pdbe_chem_comp_rdkit_properties.CrippenMR 87.279
_pdbe_chem_comp_rdkit_properties.chi0v 15.543
_pdbe_chem_comp_rdkit_properties.chi1v 10.620
_pdbe_chem_comp_rdkit_properties.chi2v 5.837
_pdbe_chem_comp_rdkit_properties.chi3v 5.837
_pdbe_chem_comp_rdkit_properties.chi4v 4.107
_pdbe_chem_comp_rdkit_properties.chi0n 27.860
_pdbe_chem_comp_rdkit_properties.chi1n 13.134
_pdbe_chem_comp_rdkit_properties.chi2n 2.322
_pdbe_chem_comp_rdkit_properties.chi3n 2.322
_pdbe_chem_comp_rdkit_properties.chi4n 1.432
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.030
_pdbe_chem_comp_rdkit_properties.kappa1 10.523
_pdbe_chem_comp_rdkit_properties.kappa2 8.607
_pdbe_chem_comp_rdkit_properties.kappa3 6.734
_pdbe_chem_comp_rdkit_properties.Phi 3.123
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UTP UniChem DrugBank DB04005
UTP UniChem 'Guide to Pharmacology' 1734
UTP UniChem 'KEGG LIGAND' C00075
UTP UniChem ChEBI 15713
UTP UniChem ZINC ZINC000003861755
UTP UniChem fdasrs UT0S826Z60
UTP UniChem HMDB HMDB0000285
UTP UniChem NMRShiftDB 60020586
UTP UniChem BindingDb 50118213
UTP UniChem DrugCentral 3639
UTP UniChem MetaboLights MTBLC15713
UTP UniChem BRENDA 33241
UTP UniChem BRENDA 63153
UTP UniChem BRENDA 65
UTP UniChem ClinicalTrials INS-316
UTP UniChem ClinicalTrials INS316
UTP UniChem ClinicalTrials "URIDINE 5'-TRIPHOSPHATE"
UTP UniChem ClinicalTrials 'URIDINE TRIPHOSPHATE'
UTP UniChem MedChemExpress HY-107372
UTP UniChem 'Probes And Drugs' PD050272
UTP UniChem SureChEMBL SCHEMBL76682
UTP UniChem 'PubChem TPHARMA' 14761469
UTP UniChem 'PubChem TPHARMA' 14932630
UTP UniChem PubChem 6133
UTP UniChem ACTor 63-39-8
UTP UniChem Nikkaji J4.827E
UTP UniChem 'EPA CompTox Dashboard' DTXSID0041147
UTP UniChem ChemicalBook CB0221667
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UTP PA 2.710 -1.680 -0.307 ETKDGv3 1
UTP O1A 3.862 -1.607 0.671 ETKDGv3 2
UTP O2A 3.087 -2.775 -1.542 ETKDGv3 3
UTP O3A 2.381 -0.141 -0.961 ETKDGv3 4
UTP "O5'" 1.331 -2.228 0.533 ETKDGv3 5
UTP PB 3.831 0.485 -1.602 ETKDGv3 6
UTP O1B 4.554 -0.643 -2.637 ETKDGv3 7
UTP O2B 4.794 0.816 -0.482 ETKDGv3 8
UTP O3B 3.521 1.896 -2.504 ETKDGv3 9
UTP PG 2.415 2.846 -1.622 ETKDGv3 10
UTP O1G 2.868 2.967 0.006 ETKDGv3 11
UTP O2G 1.033 2.242 -1.718 ETKDGv3 12
UTP O3G 2.374 4.398 -2.295 ETKDGv3 13
UTP "C5'" 0.257 -2.293 -0.376 ETKDGv3 14
UTP "C4'" -1.032 -2.612 0.390 ETKDGv3 15
UTP "O4'" -1.215 -1.655 1.415 ETKDGv3 16
UTP "C1'" -2.408 -0.950 1.146 ETKDGv3 17
UTP "C2'" -2.822 -1.220 -0.292 ETKDGv3 18
UTP "O2'" -4.219 -1.186 -0.432 ETKDGv3 19
UTP "C3'" -2.252 -2.594 -0.538 ETKDGv3 20
UTP "O3'" -3.172 -3.583 -0.146 ETKDGv3 21
UTP N1 -2.225 0.493 1.378 ETKDGv3 22
UTP C6 -0.964 1.126 1.064 ETKDGv3 23
UTP C2 -3.332 1.309 1.814 ETKDGv3 24
UTP O2 -4.461 0.797 2.042 ETKDGv3 25
UTP N3 -3.147 2.715 1.988 ETKDGv3 26
UTP C4 -1.875 3.294 1.698 ETKDGv3 27
UTP O4 -1.693 4.531 1.848 ETKDGv3 28
UTP C5 -0.781 2.441 1.218 ETKDGv3 29
UTP H2A 3.190 -3.647 -1.084 ETKDGv3 30
UTP H1B 5.351 -0.180 -3.000 ETKDGv3 31
UTP H1G 3.730 3.455 -0.007 ETKDGv3 32
UTP H3G 3.316 4.704 -2.279 ETKDGv3 33
UTP "H5'1" 0.116 -1.325 -0.909 ETKDGv3 34
UTP "H5'2" 0.437 -3.101 -1.122 ETKDGv3 35
UTP "H4'" -0.918 -3.616 0.855 ETKDGv3 36
UTP "H1'" -3.184 -1.348 1.839 ETKDGv3 37
UTP "H2'" -2.341 -0.482 -0.977 ETKDGv3 38
UTP HA -4.403 -1.222 -1.407 ETKDGv3 39
UTP "H3'" -1.989 -2.719 -1.615 ETKDGv3 40
UTP HB -2.834 -4.442 -0.512 ETKDGv3 41
UTP H6 -0.135 0.533 0.698 ETKDGv3 42
UTP H3 -3.937 3.315 2.317 ETKDGv3 43
UTP H5 0.180 2.882 0.983 ETKDGv3 44
#