Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UMQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 79


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 O2 C O sing 1.43 N N
2 C2 C1 C C sing 1.53 N N
3 C2 C3 C C sing 1.53 N N
4 C2 H21 C H sing 1.09 N N
5 C4 C5 C C sing 1.53 N N
6 C4 O4 C O sing 1.43 N N
7 C4 C3 C C sing 1.53 N N
8 C4 H41 C H sing 1.09 N N
9 C5 C6 C C sing 1.53 N N
10 C5 O5 C O sing 1.43 N N
11 C5 H51 C H sing 1.09 N N
12 C6 O6 C O sing 1.43 N N
13 C6 H61 C H sing 1.09 N N
14 C6 H62 C H sing 1.09 N N
15 O2 HO21 O H sing 0.97 N N
16 O4 HO41 O H sing 0.97 N N
17 C1 O1 C O sing 1.43 N N
18 C1 O5 C O sing 1.43 N N
19 C1 H11 C H sing 1.09 N N
20 C3 O3 C O sing 1.43 N N
21 C3 H31 C H sing 1.09 N N
22 O1 C4' O C sing 1.43 N N
23 O3 HO31 O H sing 0.97 N N
24 O6 HO61 O H sing 0.97 N N
25 C1' C2' C C sing 1.53 N N
26 C1' O1' C O sing 1.43 N N
27 C1' O5' C O sing 1.43 N N
28 C1' H1'1 C H sing 1.09 N N
29 C2' C3' C C sing 1.53 N N
30 C2' O2' C O sing 1.43 N N
31 C2' H2'1 C H sing 1.09 N N
32 C3' C4' C C sing 1.53 N N
33 C3' O3' C O sing 1.43 N N
34 C3' H3'1 C H sing 1.09 N N
35 C4' C5' C C sing 1.53 N N
36 C4' H4'1 C H sing 1.09 N N
37 C5' C6' C C sing 1.53 N N
38 C5' O5' C O sing 1.43 N N
39 C5' H5'1 C H sing 1.09 N N
40 C6' O6' C O sing 1.43 N N
41 C6' H6'1 C H sing 1.09 N N
42 C6' H6'2 C H sing 1.09 N N
43 O1' CA O C sing 1.43 N N
44 O3' HO3' O H sing 0.97 N N
45 O6' HO6' O H sing 0.97 N N
46 O2' HO2' O H sing 0.97 N N
47 CA CB C C sing 1.53 N N
48 CA HA1 C H sing 1.09 N N
49 CA HA2 C H sing 1.09 N N
50 CB CC C C sing 1.53 N N
51 CB HB1 C H sing 1.09 N N
52 CB HB2 C H sing 1.09 N N
53 CC CD C C sing 1.53 N N
54 CC HC1 C H sing 1.09 N N
55 CC HC2 C H sing 1.09 N N
56 CD CF C C sing 1.53 N N
57 CD HD1 C H sing 1.09 N N
58 CD HD2 C H sing 1.09 N N
59 CF CG C C sing 1.53 N N
60 CF HF1 C H sing 1.09 N N
61 CF HF2 C H sing 1.09 N N
62 CG CH C C sing 1.53 N N
63 CG HG1 C H sing 1.09 N N
64 CG HG2 C H sing 1.09 N N
65 CH CI C C sing 1.53 N N
66 CH HH1 C H sing 1.09 N N
67 CH HH2 C H sing 1.09 N N
68 CI CJ C C sing 1.53 N N
69 CI HI1 C H sing 1.09 N N
70 CI HI2 C H sing 1.09 N N
71 CJ CK C C sing 1.53 N N
72 CJ HJ1 C H sing 1.09 N N
73 CJ HJ2 C H sing 1.09 N N
74 CK CL C C sing 1.53 N N
75 CK HK1 C H sing 1.09 N N
76 CK HK2 C H sing 1.09 N N
77 CL HL1 C H sing 1.09 N N
78 CL HL2 C H sing 1.09 N N
79 CL HL3 C H sing 1.09 N N