Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UMQ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 R N N 0 0.524 0.468 -6.517
2 C4 C C4 S N N 0 -1.935 0.085 -6.512
3 C5 C C5 R N N 0 -1.718 -0.675 -5.202
4 C6 C C6 N N N 0 -2.826 -1.717 -5.031
5 O2 O O2 N N N 0 1.553 1.459 -6.504
6 O4 O O4 N N N 0 -3.217 0.716 -6.492
7 C1 C C1 R N N 0 0.556 -0.321 -5.207
8 C3 C C3 S N N 0 -0.84 1.148 -6.659
9 O1 O O1 N N N 0 0.318 0.565 -4.112
10 O3 O O3 N N N 0 -0.941 1.766 -7.943
11 O5 O O5 N N N 0 -0.451 -1.33 -5.227
12 O6 O O6 N N N 0 -2.629 -2.424 -3.805
13 C1' C C1' R N N 0 1.674 0.039 -0.258
14 C2' C C2' R N N 0 2.577 -0.562 -1.338
15 C3' C C3' R N N 0 2.213 0.054 -2.693
16 C4' C C4' S N N 0 0.708 -0.128 -2.926
17 C5' C C5' R N N 0 -0.053 0.438 -1.726
18 C6' C C6' N N N 0 -1.557 0.289 -1.964
19 O1' O O1' N N N 0 2.029 -0.505 1.014
20 O3' O O3' N N N 0 2.941 -0.601 -3.733
21 O5' O O5' N N N 0 0.311 -0.269 -0.543
22 O6' O O6' N N N 0 -2.272 0.896 -0.886
23 O2' O O2' N N N 0 3.943 -0.274 -1.034
24 CA C CA N N N 0 1.159 0.093 1.976
25 CB C CB N N N 0 1.487 -0.449 3.368
26 CC C CC N N N 0 0.555 0.191 4.398
27 CD C CD N N N 0 0.884 -0.351 5.791
28 CF C CF N N N 0 -0.047 0.289 6.821
29 CG C CG N N N 0 0.28 -0.252 8.213
30 CH C CH N N N 0 -0.651 0.388 9.244
31 CI C CI N N N 0 -0.322 -0.154 10.636
32 CJ C CJ N N N 0 -1.254 0.486 11.666
33 CK C CK N N N 0 -0.925 -0.056 13.058
34 CL C CL N N N 0 -1.857 0.584 14.089
35 H21 H 1H2 N N N 0 0.682 -0.209 -7.356
36 H41 H 1H4 N N N 0 -1.883 -0.609 -7.35
37 H51 H 1H5 N N N 0 -1.747 0.024 -4.367
38 H61 H 1H6 N N N 0 -3.794 -1.217 -5.011
39 H62 H 2H6 N N N 0 -2.796 -2.419 -5.864
40 HO21 H 1HO2 N N N 0 2.393 0.989 -6.413
41 HO41 H 1HO4 N N N 0 -3.312 1.182 -7.334
42 H11 H 1H1 N N N 0 1.534 -0.788 -5.089
43 H31 H 1H3 N N N 0 -0.956 1.902 -5.88
44 HO31 H 1HO3 N N N 0 -0.236 2.426 -7.992
45 HO61 H 1HO6 N N N 0 -3.347 -3.069 -3.736
46 H1'1 H 1H1' N N N 0 1.804 1.121 -0.239
47 H2'1 H 1H2' N N N 0 2.432 -1.641 -1.377
48 H3'1 H 1H3' N N N 0 2.456 1.116 -2.691
49 H4'1 H 1H4' N N N 0 0.482 -1.189 -3.033
50 H5'1 H 1H5' N N N 0 0.192 1.493 -1.607
51 H6'1 H 1H6' N N N 0 -1.827 0.778 -2.9
52 H6'2 H 2H6' N N N 0 -1.813 -0.768 -2.02
53 HO3' H 'HO3 N N N 0 3.88 -0.461 -3.548
54 HO6' H 'HO6 N N N 0 -3.213 0.781 -1.075
55 HO2' H 'HO2 N N N 0 4.13 -0.679 -0.176
56 HA1 H 1HA N N N 0 0.124 -0.144 1.728
57 HA2 H 2HA N N N 0 1.295 1.174 1.966
58 HB1 H 1HB N N N 0 2.522 -0.211 3.616
59 HB2 H 2HB N N N 0 1.351 -1.53 3.378
60 HC1 H 1HC N N N 0 -0.478 -0.046 4.15
61 HC2 H 2HC N N N 0 0.691 1.273 4.389
62 HD1 H 1HD N N N 0 1.918 -0.112 6.039
63 HD2 H 2HD N N N 0 0.748 -1.432 5.801
64 HF1 H 1HF N N N 0 -1.082 0.051 6.573
65 HF2 H 2HF N N N 0 0.088 1.371 6.811
66 HG1 H 1HG N N N 0 1.315 -0.014 8.461
67 HG2 H 2HG N N N 0 0.144 -1.334 8.223
68 HH1 H 1HH N N N 0 -1.685 0.149 8.996
69 HH2 H 2HH N N N 0 -0.514 1.469 9.234
70 HI1 H 1HI N N N 0 0.711 0.083 10.884
71 HI2 H 2HI N N N 0 -0.458 -1.236 10.646
72 HJ1 H 1HJ N N N 0 -2.288 0.248 11.418
73 HJ2 H 2HJ N N N 0 -1.118 1.567 11.656
74 HK1 H 1HK N N N 0 0.108 0.181 13.306
75 HK2 H 2HK N N N 0 -1.062 -1.138 13.068
76 HL1 H 1HL N N N 0 -1.623 0.197 15.08
77 HL2 H 2HL N N N 0 -1.721 1.665 14.079
78 HL3 H 3HL N N N 0 -2.892 0.346 13.841