data_UMQ
#
_chem_comp.id UMQ
_chem_comp.name UNDECYL-MALTOSIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H44 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-09
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 496.589
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UMQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1KB9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UMQ C2 C2 C 0 1 N N R N N N -17.713 67.729 28.164 0.524 0.468 -6.517 C2 UMQ 1
UMQ C4 C4 C 0 1 N N S N N N -19.998 68.435 27.786 -1.935 0.085 -6.512 C4 UMQ 2
UMQ C5 C5 C 0 1 N N R N N N -19.995 67.632 26.475 -1.718 -0.675 -5.202 C5 UMQ 3
UMQ C6 C6 C 0 1 N N N N N N -20.845 68.355 25.411 -2.826 -1.717 -5.031 C6 UMQ 4
UMQ O2 O2 O 0 1 N N N N N N -16.815 67.098 29.058 1.553 1.459 -6.504 O2 UMQ 5
UMQ O4 O4 O 0 1 N N N N N N -21.271 68.447 28.380 -3.217 0.716 -6.492 O4 UMQ 6
UMQ C1 C1 C 0 1 N N R N N N -17.778 67.002 26.794 0.556 -0.321 -5.207 C1 UMQ 7
UMQ C3 C3 C 0 1 N N S N N N -19.012 67.743 28.757 -0.840 1.148 -6.659 C3 UMQ 8
UMQ O1 O1 O 0 1 N N N N N N -18.329 65.718 27.016 0.318 0.565 -4.112 O1 UMQ 9
UMQ O3 O3 O 0 1 N N N N N N -18.927 68.417 30.006 -0.941 1.766 -7.943 O3 UMQ 10
UMQ O5 O5 O 0 1 N N N N N N -18.701 67.625 25.938 -0.451 -1.330 -5.227 O5 UMQ 11
UMQ O6 O6 O 0 1 N N N N N N -20.512 69.697 25.140 -2.629 -2.424 -3.805 O6 UMQ 12
UMQ "C1'" "C1'" C 0 1 N N R N N N -17.351 61.829 25.807 1.674 0.039 -0.258 "C1'" UMQ 13
UMQ "C2'" "C2'" C 0 1 N N R N N N -16.230 62.570 26.553 2.577 -0.562 -1.338 "C2'" UMQ 14
UMQ "C3'" "C3'" C 0 1 N N R N N N -16.938 63.724 27.311 2.213 0.054 -2.693 "C3'" UMQ 15
UMQ "C4'" "C4'" C 0 1 N N S N N N -17.669 64.664 26.322 0.708 -0.128 -2.926 "C4'" UMQ 16
UMQ "C5'" "C5'" C 0 1 N N R N N N -18.727 63.761 25.650 -0.053 0.438 -1.726 "C5'" UMQ 17
UMQ "C6'" "C6'" C 0 1 N N N N N N -19.453 64.614 24.600 -1.557 0.289 -1.964 "C6'" UMQ 18
UMQ "O1'" "O1'" O 0 1 N N N N N N -16.865 60.711 25.081 2.029 -0.505 1.014 "O1'" UMQ 19
UMQ "O3'" "O3'" O 0 1 N N N N N N -15.934 64.380 28.060 2.941 -0.601 -3.733 "O3'" UMQ 20
UMQ "O5'" "O5'" O 0 1 N N N N N N -18.063 62.719 24.981 0.311 -0.269 -0.543 "O5'" UMQ 21
UMQ "O6'" "O6'" O 0 1 N N N N N N -20.389 63.814 23.926 -2.272 0.896 -0.886 "O6'" UMQ 22
UMQ "O2'" "O2'" O 0 1 N N N N N N -15.580 61.649 27.409 3.943 -0.274 -1.034 "O2'" UMQ 23
UMQ CA CA C 0 1 N N N N N N -17.661 59.623 25.522 1.159 0.093 1.976 CA UMQ 24
UMQ CB CB C 0 1 N N N N N N -17.729 58.375 24.608 1.487 -0.449 3.368 CB UMQ 25
UMQ CC CC C 0 1 N N N N N N -16.926 58.414 23.312 0.555 0.191 4.398 CC UMQ 26
UMQ CD CD C 0 1 N N N N N N -17.181 57.052 22.599 0.884 -0.351 5.791 CD UMQ 27
UMQ CF CF C 0 1 N N N N N N -16.437 56.934 21.265 -0.047 0.289 6.821 CF UMQ 28
UMQ CG CG C 0 1 N N N N N N -16.709 55.584 20.578 0.280 -0.252 8.213 CG UMQ 29
UMQ CH CH C 0 1 N N N N N N -15.971 54.396 21.230 -0.651 0.388 9.244 CH UMQ 30
UMQ CI CI C 0 1 N N N N N N -14.914 53.796 20.274 -0.322 -0.154 10.636 CI UMQ 31
UMQ CJ CJ C 0 1 N N N N N N -15.515 53.308 18.942 -1.254 0.486 11.666 CJ UMQ 32
UMQ CK CK C 0 1 N N N N N N -14.421 52.724 18.030 -0.925 -0.056 13.058 CK UMQ 33
UMQ CL CL C 0 1 N N N N N N -14.201 53.586 16.774 -1.857 0.584 14.089 CL UMQ 34
UMQ H21 1H2 H 0 1 N N N N N N -17.349 68.766 27.975 0.682 -0.209 -7.356 H21 UMQ 35
UMQ H41 1H4 H 0 1 N N N N N N -19.705 69.488 27.569 -1.883 -0.609 -7.350 H41 UMQ 36
UMQ H51 1H5 H 0 1 N N N N N N -20.378 66.610 26.703 -1.747 0.024 -4.367 H51 UMQ 37
UMQ H61 1H6 H 0 1 N N N N N N -20.835 67.768 24.462 -3.794 -1.217 -5.011 H61 UMQ 38
UMQ H62 2H6 H 0 1 N N N N N N -21.923 68.285 25.683 -2.796 -2.419 -5.864 H62 UMQ 39
UMQ HO21 1HO2 H 0 0 N N N N N N -16.775 67.542 29.896 2.393 0.989 -6.413 HO21 UMQ 40
UMQ HO41 1HO4 H 0 0 N N N N N N -21.272 68.943 29.190 -3.312 1.182 -7.334 HO41 UMQ 41
UMQ H11 1H1 H 0 1 N N N N N N -16.753 66.997 26.355 1.534 -0.788 -5.089 H11 UMQ 42
UMQ H31 1H3 H 0 1 N N N N N N -19.388 66.710 28.943 -0.956 1.902 -5.880 H31 UMQ 43
UMQ HO31 1HO3 H 0 0 N N N N N N -19.791 68.426 30.400 -0.236 2.426 -7.992 HO31 UMQ 44
UMQ HO61 1HO6 H 0 0 N N N N N N -21.035 70.142 24.484 -3.347 -3.069 -3.736 HO61 UMQ 45
UMQ "H1'1" "1H1'" H 0 0 N N N N N N -18.055 61.422 26.569 1.804 1.121 -0.239 "H1'1" UMQ 46
UMQ "H2'1" "1H2'" H 0 0 N N N N N N -15.439 62.993 25.891 2.432 -1.641 -1.377 "H2'1" UMQ 47
UMQ "H3'1" "1H3'" H 0 0 N N N N N N -17.733 63.348 27.996 2.456 1.116 -2.691 "H3'1" UMQ 48
UMQ "H4'1" "1H4'" H 0 0 N N N N N N -16.962 65.135 25.599 0.482 -1.189 -3.033 "H4'1" UMQ 49
UMQ "H5'1" "1H5'" H 0 0 N N N N N N -19.437 63.347 26.402 0.192 1.493 -1.607 "H5'1" UMQ 50
UMQ "H6'1" "1H6'" H 0 0 N N N N N N -19.915 65.527 25.041 -1.827 0.778 -2.900 "H6'1" UMQ 51
UMQ "H6'2" "2H6'" H 0 0 N N N N N N -18.745 65.119 23.901 -1.813 -0.768 -2.020 "H6'2" UMQ 52
UMQ "HO3'" "'HO3" H 0 0 N N N N N N -16.367 65.086 28.524 3.880 -0.461 -3.548 "HO3'" UMQ 53
UMQ "HO6'" "'HO6" H 0 0 N N N N N N -20.838 64.341 23.276 -3.213 0.781 -1.075 "HO6'" UMQ 54
UMQ "HO2'" "'HO2" H 0 0 N N N N N N -14.887 62.107 27.870 4.130 -0.679 -0.176 "HO2'" UMQ 55
UMQ HA1 1HA H 0 1 N N N N N N -17.334 59.316 26.543 0.124 -0.144 1.728 HA1 UMQ 56
UMQ HA2 2HA H 0 1 N N N N N N -18.694 59.983 25.733 1.295 1.174 1.966 HA2 UMQ 57
UMQ HB1 1HB H 0 1 N N N N N N -17.442 57.470 25.194 2.522 -0.211 3.616 HB1 UMQ 58
UMQ HB2 2HB H 0 1 N N N N N N -18.794 58.143 24.376 1.351 -1.530 3.378 HB2 UMQ 59
UMQ HC1 1HC H 0 1 N N N N N N -17.157 59.298 22.673 -0.478 -0.046 4.150 HC1 UMQ 60
UMQ HC2 2HC H 0 1 N N N N N N -15.844 58.636 23.467 0.691 1.273 4.389 HC2 UMQ 61
UMQ HD1 1HD H 0 1 N N N N N N -16.935 56.196 23.270 1.918 -0.112 6.039 HD1 UMQ 62
UMQ HD2 2HD H 0 1 N N N N N N -18.272 56.868 22.465 0.748 -1.432 5.801 HD2 UMQ 63
UMQ HF1 1HF H 0 1 N N N N N N -16.675 57.788 20.589 -1.082 0.051 6.573 HF1 UMQ 64
UMQ HF2 2HF H 0 1 N N N N N N -15.343 57.112 21.392 0.088 1.371 6.811 HF2 UMQ 65
UMQ HG1 1HG H 0 1 N N N N N N -17.804 55.384 20.523 1.315 -0.014 8.461 HG1 UMQ 66
UMQ HG2 2HG H 0 1 N N N N N N -16.475 55.642 19.489 0.144 -1.334 8.223 HG2 UMQ 67
UMQ HH1 1HH H 0 1 N N N N N N -15.521 54.682 22.209 -1.685 0.149 8.996 HH1 UMQ 68
UMQ HH2 2HH H 0 1 N N N N N N -16.685 53.618 21.589 -0.514 1.469 9.234 HH2 UMQ 69
UMQ HI1 1HI H 0 1 N N N N N N -14.083 54.518 20.095 0.711 0.083 10.884 HI1 UMQ 70
UMQ HI2 2HI H 0 1 N N N N N N -14.341 52.980 20.774 -0.458 -1.236 10.646 HI2 UMQ 71
UMQ HJ1 1HJ H 0 1 N N N N N N -16.346 52.583 19.105 -2.288 0.248 11.418 HJ1 UMQ 72
UMQ HJ2 2HJ H 0 1 N N N N N N -16.092 54.113 18.430 -1.118 1.567 11.656 HJ2 UMQ 73
UMQ HK1 1HK H 0 1 N N N N N N -13.468 52.569 18.587 0.108 0.181 13.306 HK1 UMQ 74
UMQ HK2 2HK H 0 1 N N N N N N -14.640 51.664 17.761 -1.062 -1.138 13.068 HK2 UMQ 75
UMQ HL1 1HL H 0 1 N N N N N N -13.408 53.163 16.113 -1.623 0.197 15.080 HL1 UMQ 76
UMQ HL2 2HL H 0 1 N N N N N N -15.154 53.740 16.216 -1.721 1.665 14.079 HL2 UMQ 77
UMQ HL3 3HL H 0 1 N N N N N N -13.981 54.645 17.042 -2.892 0.346 13.841 HL3 UMQ 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UMQ C2 O2 SING N N 1
UMQ C2 C1 SING N N 2
UMQ C2 C3 SING N N 3
UMQ C2 H21 SING N N 4
UMQ C4 C5 SING N N 5
UMQ C4 O4 SING N N 6
UMQ C4 C3 SING N N 7
UMQ C4 H41 SING N N 8
UMQ C5 C6 SING N N 9
UMQ C5 O5 SING N N 10
UMQ C5 H51 SING N N 11
UMQ C6 O6 SING N N 12
UMQ C6 H61 SING N N 13
UMQ C6 H62 SING N N 14
UMQ O2 HO21 SING N N 15
UMQ O4 HO41 SING N N 16
UMQ C1 O1 SING N N 17
UMQ C1 O5 SING N N 18
UMQ C1 H11 SING N N 19
UMQ C3 O3 SING N N 20
UMQ C3 H31 SING N N 21
UMQ O1 "C4'" SING N N 22
UMQ O3 HO31 SING N N 23
UMQ O6 HO61 SING N N 24
UMQ "C1'" "C2'" SING N N 25
UMQ "C1'" "O1'" SING N N 26
UMQ "C1'" "O5'" SING N N 27
UMQ "C1'" "H1'1" SING N N 28
UMQ "C2'" "C3'" SING N N 29
UMQ "C2'" "O2'" SING N N 30
UMQ "C2'" "H2'1" SING N N 31
UMQ "C3'" "C4'" SING N N 32
UMQ "C3'" "O3'" SING N N 33
UMQ "C3'" "H3'1" SING N N 34
UMQ "C4'" "C5'" SING N N 35
UMQ "C4'" "H4'1" SING N N 36
UMQ "C5'" "C6'" SING N N 37
UMQ "C5'" "O5'" SING N N 38
UMQ "C5'" "H5'1" SING N N 39
UMQ "C6'" "O6'" SING N N 40
UMQ "C6'" "H6'1" SING N N 41
UMQ "C6'" "H6'2" SING N N 42
UMQ "O1'" CA SING N N 43
UMQ "O3'" "HO3'" SING N N 44
UMQ "O6'" "HO6'" SING N N 45
UMQ "O2'" "HO2'" SING N N 46
UMQ CA CB SING N N 47
UMQ CA HA1 SING N N 48
UMQ CA HA2 SING N N 49
UMQ CB CC SING N N 50
UMQ CB HB1 SING N N 51
UMQ CB HB2 SING N N 52
UMQ CC CD SING N N 53
UMQ CC HC1 SING N N 54
UMQ CC HC2 SING N N 55
UMQ CD CF SING N N 56
UMQ CD HD1 SING N N 57
UMQ CD HD2 SING N N 58
UMQ CF CG SING N N 59
UMQ CF HF1 SING N N 60
UMQ CF HF2 SING N N 61
UMQ CG CH SING N N 62
UMQ CG HG1 SING N N 63
UMQ CG HG2 SING N N 64
UMQ CH CI SING N N 65
UMQ CH HH1 SING N N 66
UMQ CH HH2 SING N N 67
UMQ CI CJ SING N N 68
UMQ CI HI1 SING N N 69
UMQ CI HI2 SING N N 70
UMQ CJ CK SING N N 71
UMQ CJ HJ1 SING N N 72
UMQ CJ HJ2 SING N N 73
UMQ CK CL SING N N 74
UMQ CK HK1 SING N N 75
UMQ CK HK2 SING N N 76
UMQ CL HL1 SING N N 77
UMQ CL HL2 SING N N 78
UMQ CL HL3 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UMQ SMILES ACDLabs 10.04 O(CCCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
UMQ SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
UMQ SMILES CACTVS 3.341 CCCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
UMQ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
UMQ SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
UMQ InChI InChI 1.03 InChI=1S/C23H44O11/c1-2-3-4-5-6-7-8-9-10-11-31-22-20(30)18(28)21(15(13-25)33-22)34-23-19(29)17(27)16(26)14(12-24)32-23/h14-30H,2-13H2,1H3/t14-,15-,16-,17+,18-,19-,20-,21-,22-,23-/m1/s1
UMQ InChIKey InChI 1.03 UYEMNFYVTFDKRG-ZNGNCRBCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UMQ "SYSTEMATIC NAME" ACDLabs 10.04 "undecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"
UMQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-2-(hydroxymethyl)-6-undecoxy-oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UMQ 'Create component' 2002-09-09 RCSB
UMQ 'Modify descriptor' 2011-06-04 RCSB
UMQ 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id UMQ
_pdbx_chem_comp_synonyms.name UNDECYL-BETA-D-MALTOPYRANOSIDE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id UMQ
_pdbe_chem_comp_drugbank_details.drugbank_id DB02686
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Undecyl-Beta-D-Maltopyranoside
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
UMQ UNDECYL-BETA-D-MALTOPYRANOSIDE wwPDB ?
UMQ Undecyl-Beta-D-Maltopyranoside DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id UMQ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02686
_pdbe_chem_comp_drugbank_classification.parent 'Fatty acyl glycosides of mono- and disaccharides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Fatty Acyls'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. These are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.'
#
_pdbe_chem_comp_drugbank_targets.comp_id UMQ
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02686
_pdbe_chem_comp_drugbank_targets.name 'V-type sodium ATPase subunit K'
_pdbe_chem_comp_drugbank_targets.organism
'Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P43457
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UMQ C2 C 9.495 -8.768 1
UMQ C4 C 6.897 -8.768 2
UMQ C5 C 6.897 -7.268 3
UMQ C6 C 5.598 -6.518 4
UMQ O2 O 10.794 -9.518 5
UMQ O4 O 5.598 -9.518 6
UMQ C1 C 9.495 -7.268 7
UMQ C3 C 8.196 -9.518 8
UMQ O1 O 10.794 -6.518 9
UMQ O3 O 8.196 -11.018 10
UMQ O5 O 8.196 -6.518 11
UMQ O6 O 4.299 -7.268 12
UMQ "C1'" C 10.794 -2.018 13
UMQ "C2'" C 12.093 -2.768 14
UMQ "C3'" C 12.093 -4.268 15
UMQ "C4'" C 10.794 -5.018 16
UMQ "C5'" C 9.495 -4.268 17
UMQ "C6'" C 8.196 -5.018 18
UMQ "O1'" O 10.794 -0.517 19
UMQ "O3'" O 13.392 -5.018 20
UMQ "O5'" O 9.495 -2.768 21
UMQ "O6'" O 6.897 -4.268 22
UMQ "O2'" O 13.392 -2.018 23
UMQ CA C 9.495 0.233 24
UMQ CB C 9.495 1.732 25
UMQ CC C 8.196 2.482 26
UMQ CD C 8.196 3.982 27
UMQ CF C 6.897 4.732 28
UMQ CG C 6.897 6.232 29
UMQ CH C 5.598 6.982 30
UMQ CI C 5.598 8.482 31
UMQ CJ C 4.299 9.232 32
UMQ CK C 4.299 10.732 33
UMQ CL C 3.000 11.482 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UMQ C2 O2 SINGLE BEGINDASH 1
UMQ C2 C1 SINGLE NONE 2
UMQ C2 C3 SINGLE NONE 3
UMQ C4 C5 SINGLE NONE 4
UMQ C4 O4 SINGLE BEGINDASH 5
UMQ C4 C3 SINGLE NONE 6
UMQ C5 C6 SINGLE BEGINWEDGE 7
UMQ C5 O5 SINGLE NONE 8
UMQ C6 O6 SINGLE NONE 9
UMQ C1 O1 SINGLE BEGINDASH 10
UMQ C1 O5 SINGLE NONE 11
UMQ C3 O3 SINGLE BEGINWEDGE 12
UMQ "C4'" O1 SINGLE BEGINDASH 13
UMQ "C1'" "C2'" SINGLE NONE 14
UMQ "C1'" "O1'" SINGLE BEGINWEDGE 15
UMQ "C1'" "O5'" SINGLE NONE 16
UMQ "C2'" "C3'" SINGLE NONE 17
UMQ "C2'" "O2'" SINGLE BEGINDASH 18
UMQ "C3'" "C4'" SINGLE NONE 19
UMQ "C3'" "O3'" SINGLE BEGINWEDGE 20
UMQ "C4'" "C5'" SINGLE NONE 21
UMQ "C5'" "C6'" SINGLE BEGINWEDGE 22
UMQ "C5'" "O5'" SINGLE NONE 23
UMQ "C6'" "O6'" SINGLE NONE 24
UMQ "O1'" CA SINGLE NONE 25
UMQ CA CB SINGLE NONE 26
UMQ CB CC SINGLE NONE 27
UMQ CC CD SINGLE NONE 28
UMQ CD CF SINGLE NONE 29
UMQ CF CG SINGLE NONE 30
UMQ CG CH SINGLE NONE 31
UMQ CH CI SINGLE NONE 32
UMQ CI CJ SINGLE NONE 33
UMQ CJ CK SINGLE NONE 34
UMQ CK CL SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UMQ MurckoScaffold S1 scaffold 'C1CC[C@@H](O[C@H]2CCCOC2)OC1' InChI=1S/C10H18O3/c1-2-7-12-10(5-1)13-9-4-3-6-11-8-9/h9-10H,1-8H2/t9-,10+/m0/s1 LIWARGQXGIOGLQ-VHSXEESVSA-N
UMQ pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UMQ C2 S1 1
UMQ C4 S1 1
UMQ C5 S1 1
UMQ C1 S1 1
UMQ C3 S1 1
UMQ O1 S1 1
UMQ O5 S1 1
UMQ "C1'" S1 1
UMQ "C2'" S1 1
UMQ "C3'" S1 1
UMQ "C4'" S1 1
UMQ "C5'" S1 1
UMQ "O5'" S1 1
UMQ C4 F1 1
UMQ C5 F1 1
UMQ O5 F1 1
UMQ C1 F1 1
UMQ C2 F1 1
UMQ C3 F1 1
UMQ O1 F1 1
UMQ "C4'" F1 2
UMQ "C5'" F1 2
UMQ "O5'" F1 2
UMQ "C1'" F1 2
UMQ "C2'" F1 2
UMQ "C3'" F1 2
UMQ "O1'" F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id UMQ
_pdbe_chem_comp_rdkit_properties.exactmw 496.288
_pdbe_chem_comp_rdkit_properties.amw 496.594
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 263.196
_pdbe_chem_comp_rdkit_properties.tpsa 178.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.842
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.580
_pdbe_chem_comp_rdkit_properties.chi0v 15.991
_pdbe_chem_comp_rdkit_properties.chi1v 8.062
_pdbe_chem_comp_rdkit_properties.chi2v 3.073
_pdbe_chem_comp_rdkit_properties.chi3v 3.073
_pdbe_chem_comp_rdkit_properties.chi4v 1.739
_pdbe_chem_comp_rdkit_properties.chi0n 59.991
_pdbe_chem_comp_rdkit_properties.chi1n 29.420
_pdbe_chem_comp_rdkit_properties.chi2n 3.073
_pdbe_chem_comp_rdkit_properties.chi3n 3.073
_pdbe_chem_comp_rdkit_properties.chi4n 1.739
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.440
_pdbe_chem_comp_rdkit_properties.kappa1 5.765
_pdbe_chem_comp_rdkit_properties.kappa2 15.624
_pdbe_chem_comp_rdkit_properties.kappa3 8.309
_pdbe_chem_comp_rdkit_properties.Phi 2.649
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UMQ UniChem DrugBank DB02686
UMQ UniChem ZINC ZINC000058649715
UMQ UniChem eMolecules 6761063
UMQ UniChem ChemicalBook CB8511339
UMQ UniChem 'Probes And Drugs' PD059805
UMQ UniChem Nikkaji J2.137.914J
UMQ UniChem 'PubChem TPHARMA' 16723136
UMQ UniChem PubChem 447793
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UMQ C2 -4.404 0.966 2.204 ETKDGv3 1
UMQ C4 -6.728 1.918 1.741 ETKDGv3 2
UMQ C5 -7.127 0.539 1.125 ETKDGv3 3
UMQ C6 -7.667 0.669 -0.308 ETKDGv3 4
UMQ O2 -3.851 0.119 3.180 ETKDGv3 5
UMQ O4 -7.843 2.522 2.346 ETKDGv3 6
UMQ C1 -4.806 0.140 0.958 ETKDGv3 7
UMQ C3 -5.631 1.705 2.799 ETKDGv3 8
UMQ O1 -3.880 -0.913 0.739 ETKDGv3 9
UMQ O3 -5.247 2.925 3.384 ETKDGv3 10
UMQ O5 -6.084 -0.434 1.165 ETKDGv3 11
UMQ O6 -8.874 1.381 -0.308 ETKDGv3 12
UMQ "C1'" -0.571 -1.430 -1.708 ETKDGv3 13
UMQ "C2'" -0.274 -0.796 -0.333 ETKDGv3 14
UMQ "C3'" -1.479 -0.987 0.611 ETKDGv3 15
UMQ "C4'" -2.780 -0.516 -0.069 ETKDGv3 16
UMQ "C5'" -2.884 -1.183 -1.466 ETKDGv3 17
UMQ "C6'" -4.141 -0.718 -2.216 ETKDGv3 18
UMQ "O1'" 0.503 -1.121 -2.581 ETKDGv3 19
UMQ "O3'" -1.270 -0.314 1.827 ETKDGv3 20
UMQ "O5'" -1.747 -0.856 -2.251 ETKDGv3 21
UMQ "O6'" -4.218 -1.340 -3.471 ETKDGv3 22
UMQ "O2'" 0.895 -1.336 0.234 ETKDGv3 23
UMQ CA 1.222 -2.282 -2.947 ETKDGv3 24
UMQ CB 2.484 -1.886 -3.720 ETKDGv3 25
UMQ CC 3.417 -0.955 -2.926 ETKDGv3 26
UMQ CD 4.095 -1.667 -1.742 ETKDGv3 27
UMQ CF 5.141 -0.785 -1.043 ETKDGv3 28
UMQ CG 4.500 0.344 -0.216 ETKDGv3 29
UMQ CH 5.543 1.170 0.552 ETKDGv3 30
UMQ CI 6.022 0.469 1.836 ETKDGv3 31
UMQ CJ 7.097 1.288 2.580 ETKDGv3 32
UMQ CK 8.529 0.777 2.348 ETKDGv3 33
UMQ CL 9.000 0.947 0.905 ETKDGv3 34
UMQ H21 -3.634 1.704 1.876 ETKDGv3 35
UMQ H41 -6.314 2.586 0.947 ETKDGv3 36
UMQ H51 -7.952 0.125 1.746 ETKDGv3 37
UMQ H61 -6.926 1.184 -0.958 ETKDGv3 38
UMQ H62 -7.844 -0.350 -0.721 ETKDGv3 39
UMQ HO21 -3.371 0.702 3.825 ETKDGv3 40
UMQ HO41 -8.309 3.044 1.642 ETKDGv3 41
UMQ H11 -4.855 0.818 0.072 ETKDGv3 42
UMQ H31 -6.070 1.072 3.604 ETKDGv3 43
UMQ HO31 -4.913 3.515 2.659 ETKDGv3 44
UMQ HO61 -9.164 1.432 -1.256 ETKDGv3 45
UMQ "H1'1" -0.723 -2.533 -1.578 ETKDGv3 46
UMQ "H2'1" -0.107 0.294 -0.484 ETKDGv3 47
UMQ "H3'1" -1.581 -2.072 0.838 ETKDGv3 48
UMQ "H4'1" -2.699 0.590 -0.209 ETKDGv3 49
UMQ "H5'1" -2.972 -2.288 -1.343 ETKDGv3 50
UMQ "H6'1" -5.047 -1.003 -1.641 ETKDGv3 51
UMQ "H6'2" -4.140 0.391 -2.329 ETKDGv3 52
UMQ "HO3'" -1.180 0.654 1.626 ETKDGv3 53
UMQ "HO6'" -3.647 -0.812 -4.089 ETKDGv3 54
UMQ "HO2'" 0.750 -2.311 0.353 ETKDGv3 55
UMQ HA1 0.592 -2.917 -3.609 ETKDGv3 56
UMQ HA2 1.513 -2.883 -2.058 ETKDGv3 57
UMQ HB1 2.175 -1.364 -4.652 ETKDGv3 58
UMQ HB2 3.035 -2.803 -4.022 ETKDGv3 59
UMQ HC1 2.844 -0.073 -2.570 ETKDGv3 60
UMQ HC2 4.203 -0.585 -3.619 ETKDGv3 61
UMQ HD1 4.609 -2.578 -2.121 ETKDGv3 62
UMQ HD2 3.339 -1.993 -0.998 ETKDGv3 63
UMQ HF1 5.737 -1.440 -0.374 ETKDGv3 64
UMQ HF2 5.838 -0.356 -1.796 ETKDGv3 65
UMQ HG1 3.751 -0.074 0.492 ETKDGv3 66
UMQ HG2 3.964 1.034 -0.902 ETKDGv3 67
UMQ HH1 6.399 1.406 -0.115 ETKDGv3 68
UMQ HH2 5.075 2.138 0.839 ETKDGv3 69
UMQ HI1 6.402 -0.550 1.613 ETKDGv3 70
UMQ HI2 5.145 0.346 2.508 ETKDGv3 71
UMQ HJ1 6.895 1.215 3.671 ETKDGv3 72
UMQ HJ2 7.034 2.368 2.320 ETKDGv3 73
UMQ HK1 8.602 -0.294 2.637 ETKDGv3 74
UMQ HK2 9.216 1.348 3.009 ETKDGv3 75
UMQ HL1 8.856 1.996 0.569 ETKDGv3 76
UMQ HL2 10.080 0.699 0.838 ETKDGv3 77
UMQ HL3 8.447 0.258 0.232 ETKDGv3 78
#