Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TOP    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N2 C N doub 1.32 N Y
2 C1 C8 C C sing 1.38 N Y
3 C1 H1 C H sing 1.08 N N
4 N2 C3 N C sing 1.33 N Y
5 C3 N4 C N sing 1.38 N N
6 C3 N5 C N doub 1.32 N Y
7 N4 HN41 N H sing 0.97 N N
8 N4 HN42 N H sing 0.97 N N
9 N5 C6 N C sing 1.33 N Y
10 C6 N7 C N sing 1.38 N N
11 C6 C8 C C doub 1.4 N Y
12 N7 HN71 N H sing 0.97 N N
13 N7 HN72 N H sing 0.97 N N
14 C8 C9 C C sing 1.51 N N
15 C9 C10 C C sing 1.51 N N
16 C9 H91 C H sing 1.09 N N
17 C9 H92 C H sing 1.09 N N
18 C10 C11 C C doub 1.38 N Y
19 C10 C21 C C sing 1.38 N Y
20 C11 C12 C C sing 1.39 N Y
21 C11 H11 C H sing 1.08 N N
22 C12 O13 C O sing 1.36 N N
23 C12 C15 C C doub 1.39 N Y
24 O13 C14 O C sing 1.43 N N
25 C14 H141 C H sing 1.09 N N
26 C14 H142 C H sing 1.09 N N
27 C14 H143 C H sing 1.09 N N
28 C15 O16 C O sing 1.36 N N
29 C15 C18 C C sing 1.39 N Y
30 O16 C17 O C sing 1.43 N N
31 C17 H171 C H sing 1.09 N N
32 C17 H172 C H sing 1.09 N N
33 C17 H173 C H sing 1.09 N N
34 C18 O19 C O sing 1.36 N N
35 C18 C21 C C doub 1.39 N Y
36 O19 C20 O C sing 1.43 N N
37 C20 H201 C H sing 1.09 N N
38 C20 H202 C H sing 1.09 N N
39 C20 H203 C H sing 1.09 N N
40 C21 H21 C H sing 1.08 N N