data_TOP
#
_chem_comp.id TOP
_chem_comp.name TRIMETHOPRIM
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H18 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 290.318
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TOP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DYR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TOP C1 C1 C 0 1 Y N N N N N 16.577 4.023 -5.254 -1.424 -0.480 2.568 C1 TOP 1
TOP N2 N2 N 0 1 Y N N N N N 15.914 2.958 -4.788 -1.498 0.402 3.552 N2 TOP 2
TOP C3 C3 C 0 1 Y N N N N N 16.103 2.647 -3.538 -0.401 0.909 4.097 C3 TOP 3
TOP N4 N4 N 0 1 N N N N N N 15.422 1.596 -2.999 -0.520 1.829 5.123 N4 TOP 4
TOP N5 N5 N 0 1 Y N N N N N 16.873 3.282 -2.623 0.806 0.557 3.683 N5 TOP 5
TOP C6 C6 C 0 1 Y N N N N N 17.514 4.358 -3.090 0.954 -0.328 2.702 C6 TOP 6
TOP N7 N7 N 0 1 N N N N N N 18.277 5.090 -2.249 2.218 -0.694 2.271 N7 TOP 7
TOP C8 C8 C 0 1 Y N N N N N 17.353 4.769 -4.403 -0.183 -0.875 2.105 C8 TOP 8
TOP C9 C9 C 0 1 N N N N N N 18.101 6.012 -4.909 -0.061 -1.877 0.987 C9 TOP 9
TOP C10 C10 C 0 1 Y N N N N N 17.980 6.391 -6.387 -0.038 -1.155 -0.334 C10 TOP 10
TOP C11 C11 C 0 1 Y N N N N N 19.128 6.284 -7.163 1.166 -0.748 -0.877 C11 TOP 11
TOP C12 C12 C 0 1 Y N N N N N 19.110 6.637 -8.517 1.192 -0.083 -2.093 C12 TOP 12
TOP O13 O13 O 0 1 N N N N N N 20.213 6.499 -9.320 2.377 0.316 -2.626 O13 TOP 13
TOP C14 C14 C 0 1 N N N N N N 21.464 6.362 -8.690 3.398 -0.088 -1.711 C14 TOP 14
TOP C15 C15 C 0 1 Y N N N N N 17.905 7.114 -9.067 0.003 0.179 -2.764 C15 TOP 15
TOP O16 O16 O 0 1 N N N N N N 17.827 7.494 -10.423 0.024 0.833 -3.958 O16 TOP 16
TOP C17 C17 C 0 1 N N N N N N 16.651 6.953 -10.933 -0.085 2.227 -3.667 C17 TOP 17
TOP C18 C18 C 0 1 Y N N N N N 16.760 7.254 -8.290 -1.204 -0.235 -2.218 C18 TOP 18
TOP O19 O19 O 0 1 N N N N N N 15.630 7.745 -8.949 -2.370 0.014 -2.873 O19 TOP 19
TOP C20 C20 C 0 1 N N N N N N 14.648 8.167 -7.997 -3.420 -0.521 -2.067 C20 TOP 20
TOP C21 C21 C 0 1 Y N N N N N 16.772 6.898 -6.932 -1.221 -0.900 -1.001 C21 TOP 21
TOP H1 H1 H 0 1 N N N N N N 16.485 4.281 -6.322 -2.324 -0.887 2.131 H1 TOP 22
TOP HN41 1HN4 H 0 0 N N N N N N 15.570 1.352 -2.019 -1.399 2.095 5.436 HN41 TOP 23
TOP HN42 2HN4 H 0 0 N N N N N N 15.594 0.768 -3.570 0.274 2.208 5.530 HN42 TOP 24
TOP HN71 1HN7 H 0 0 N N N N N N 18.766 5.911 -2.605 3.004 -0.304 2.685 HN71 TOP 25
TOP HN72 2HN7 H 0 0 N N N N N N 18.956 4.473 -1.803 2.318 -1.341 1.554 HN72 TOP 26
TOP H91 1H9 H 0 1 N N N N N N 17.806 6.888 -4.286 -0.912 -2.558 1.015 H91 TOP 27
TOP H92 2H9 H 0 1 N N N N N N 19.180 5.914 -4.648 0.861 -2.445 1.107 H92 TOP 28
TOP H11 H11 H 0 1 N N N N N N 20.059 5.916 -6.701 2.089 -0.949 -0.353 H11 TOP 29
TOP H141 1H14 H 0 0 N N N N N N 22.360 6.249 -9.342 4.372 0.212 -2.098 H141 TOP 30
TOP H142 2H14 H 0 0 N N N N N N 21.620 7.217 -7.992 3.229 0.386 -0.745 H142 TOP 31
TOP H143 3H14 H 0 0 N N N N N N 21.423 5.510 -7.971 3.372 -1.171 -1.594 H143 TOP 32
TOP H171 1H17 H 0 0 N N N N N N 16.589 7.253 -12.005 -0.073 2.795 -4.598 H171 TOP 33
TOP H172 2H17 H 0 0 N N N N N N 16.575 5.850 -10.782 -1.020 2.416 -3.139 H172 TOP 34
TOP H173 3H17 H 0 0 N N N N N N 15.747 7.239 -10.346 0.752 2.536 -3.043 H173 TOP 35
TOP H201 1H20 H 0 0 N N N N N N 13.746 8.558 -8.522 -4.379 -0.343 -2.554 H201 TOP 36
TOP H202 2H20 H 0 0 N N N N N N 14.390 7.356 -7.276 -3.271 -1.593 -1.940 H202 TOP 37
TOP H203 3H20 H 0 0 N N N N N N 15.061 8.906 -7.271 -3.413 -0.035 -1.091 H203 TOP 38
TOP H21 H21 H 0 1 N N N N N N 15.864 7.012 -6.315 -2.161 -1.220 -0.575 H21 TOP 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TOP C1 N2 DOUB Y N 1
TOP C1 C8 SING Y N 2
TOP C1 H1 SING N N 3
TOP N2 C3 SING Y N 4
TOP C3 N4 SING N N 5
TOP C3 N5 DOUB Y N 6
TOP N4 HN41 SING N N 7
TOP N4 HN42 SING N N 8
TOP N5 C6 SING Y N 9
TOP C6 N7 SING N N 10
TOP C6 C8 DOUB Y N 11
TOP N7 HN71 SING N N 12
TOP N7 HN72 SING N N 13
TOP C8 C9 SING N N 14
TOP C9 C10 SING N N 15
TOP C9 H91 SING N N 16
TOP C9 H92 SING N N 17
TOP C10 C11 DOUB Y N 18
TOP C10 C21 SING Y N 19
TOP C11 C12 SING Y N 20
TOP C11 H11 SING N N 21
TOP C12 O13 SING N N 22
TOP C12 C15 DOUB Y N 23
TOP O13 C14 SING N N 24
TOP C14 H141 SING N N 25
TOP C14 H142 SING N N 26
TOP C14 H143 SING N N 27
TOP C15 O16 SING N N 28
TOP C15 C18 SING Y N 29
TOP O16 C17 SING N N 30
TOP C17 H171 SING N N 31
TOP C17 H172 SING N N 32
TOP C17 H173 SING N N 33
TOP C18 O19 SING N N 34
TOP C18 C21 DOUB Y N 35
TOP O19 C20 SING N N 36
TOP C20 H201 SING N N 37
TOP C20 H202 SING N N 38
TOP C20 H203 SING N N 39
TOP C21 H21 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TOP SMILES ACDLabs 10.04 n1c(N)c(cnc1N)Cc2cc(OC)c(OC)c(OC)c2
TOP SMILES_CANONICAL CACTVS 3.341 COc1cc(Cc2cnc(N)nc2N)cc(OC)c1OC
TOP SMILES CACTVS 3.341 COc1cc(Cc2cnc(N)nc2N)cc(OC)c1OC
TOP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COc1cc(cc(c1OC)OC)Cc2cnc(nc2N)N
TOP SMILES "OpenEye OEToolkits" 1.5.0 COc1cc(cc(c1OC)OC)Cc2cnc(nc2N)N
TOP InChI InChI 1.03 InChI=1S/C14H18N4O3/c1-19-10-5-8(6-11(20-2)12(10)21-3)4-9-7-17-14(16)18-13(9)15/h5-7H,4H2,1-3H3,(H4,15,16,17,18)
TOP InChIKey InChI 1.03 IEDVJHCEMCRBQM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TOP "SYSTEMATIC NAME" ACDLabs 10.04 5-(3,4,5-trimethoxybenzyl)pyrimidine-2,4-diamine
TOP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 5-[(3,4,5-trimethoxyphenyl)methyl]pyrimidine-2,4-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TOP 'Create component' 1999-07-08 EBI
TOP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id TOP
_pdbe_chem_comp_drugbank_details.drugbank_id DB00440
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Trimethoprim
_pdbe_chem_comp_drugbank_details.description
'Trimethoprim is an antifolate antibacterial agent that inhibits bacterial dihydrofolate reductase (DHFR), a critical enzyme that catalyzes the formation of tetrahydrofolic acid (THF) - in doing so, it prevents the synthesis of bacterial DNA and ultimately continued bacterial survival.[L11893] Trimethoprim is often used in combination with [sulfamethoxazole] due to their complementary and synergistic mechanisms but may be used as a monotherapy in the treatment and/or prophylaxis of urinary tract infections.[L11893,L11830] It is structurally and chemically related to [pyrimethamine], another antifolate antimicrobial used in the treatment of plasmodial infections.[T707]'
_pdbe_chem_comp_drugbank_details.cas_number 738-70-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Trimethoprim is a reversible inhibitor of dihydrofolate reductase, one of the principal enzymes catalyzing the formation of tetrahydrofolic acid (THF) from dihydrofolic acid (DHF).[L11893] Tetrahydrofolic acid is necessary for the biosynthesis of bacterial nucleic acids and proteins and ultimately for continued bacterial survival - inhibiting its synthesis, then, results in bactericidal activity. Trimethoprim binds with a much stronger affinity to bacterial dihydrofolate reductase as compared to its mammalian counterpart, allowing trimethoprim to selectively interfere with bacterial biosynthetic processes.[L11893]   Trimethoprim is often given in combination with sulfamethoxazole, which inhibits the preceding step in bacterial protein synthesis - given together, sulfamethoxazole and trimethoprim inhibit two consecutive steps in the biosynthesis of bacterial nucleic acids and proteins.[L11830]  As a monotherapy trimethoprim is considered bacteriostatic, but in combination with sulfamethoxazole is thought to exert bactericidal activity.[L11887,A191089]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
TOP 2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidine DrugBank ?
TOP '5-[(3,4,5-trimethoxyphenyl)methyl]-2,4-pyrimidinediamine' DrugBank ?
TOP Trimethoprim DrugBank ?
TOP Trimethoprimum DrugBank ?
TOP Alprim DrugBank 'International brand'
TOP Catin DrugBank 'International brand'
TOP Eumi DrugBank 'International brand'
TOP Inflamnil DrugBank 'International brand'
TOP Lannacher DrugBank 'International brand'
TOP Lariago DrugBank 'International brand'
TOP Meprim DrugBank 'International brand'
TOP Metipine DrugBank 'International brand'
TOP Monotrim DrugBank 'International brand'
TOP Motrim DrugBank 'International brand'
TOP Trimpex DrugBank 'International brand'
TOP Triprim DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id TOP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00440
_pdbe_chem_comp_drugbank_classification.parent Anisoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Phenol ethers'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
TOP DB00440 'Dihydrofolate reductase' Humans P00374 yes 1
TOP DB00440 'Dihydrofolate reductase' 'Escherichia coli (strain K12)' P0ABQ4 yes 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TOP C1 C 6.404 -1.410 1
TOP N2 N 5.104 -2.160 2
TOP C3 C 5.104 -3.660 3
TOP N4 N 3.805 -4.410 4
TOP N5 N 6.404 -4.410 5
TOP C6 C 7.702 -3.660 6
TOP N7 N 9.002 -4.410 7
TOP C8 C 7.702 -2.160 8
TOP C9 C 9.002 -1.410 9
TOP C10 C 9.002 0.090 10
TOP C11 C 7.702 0.840 11
TOP C12 C 7.702 2.340 12
TOP O13 O 6.404 3.090 13
TOP C14 C 5.104 2.340 14
TOP C15 C 9.002 3.090 15
TOP O16 O 9.002 4.590 16
TOP C17 C 10.301 5.340 17
TOP C18 C 10.301 2.340 18
TOP O19 O 11.600 3.090 19
TOP C20 C 12.899 2.340 20
TOP C21 C 10.301 0.840 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TOP C1 N2 DOUBLE NONE 1
TOP C1 C8 SINGLE NONE 2
TOP N2 C3 SINGLE NONE 3
TOP C3 N4 SINGLE NONE 4
TOP C3 N5 DOUBLE NONE 5
TOP N5 C6 SINGLE NONE 6
TOP C6 N7 SINGLE NONE 7
TOP C6 C8 DOUBLE NONE 8
TOP C8 C9 SINGLE NONE 9
TOP C9 C10 SINGLE NONE 10
TOP C10 C11 DOUBLE NONE 11
TOP C10 C21 SINGLE NONE 12
TOP C11 C12 SINGLE NONE 13
TOP C12 O13 SINGLE NONE 14
TOP C12 C15 DOUBLE NONE 15
TOP O13 C14 SINGLE NONE 16
TOP C15 O16 SINGLE NONE 17
TOP C15 C18 SINGLE NONE 18
TOP O16 C17 SINGLE NONE 19
TOP C18 O19 SINGLE NONE 20
TOP C18 C21 DOUBLE NONE 21
TOP O19 C20 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TOP MurckoScaffold S1 scaffold c1ccc(Cc2cncnc2)cc1 InChI=1S/C11H10N2/c1-2-4-10(5-3-1)6-11-7-12-9-13-8-11/h1-5,7-9H,6H2 NPYPQKXJJZZSAX-UHFFFAOYSA-N
TOP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TOP pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TOP C1 S1 1
TOP N2 S1 1
TOP C3 S1 1
TOP N5 S1 1
TOP C6 S1 1
TOP C8 S1 1
TOP C9 S1 1
TOP C10 S1 1
TOP C11 S1 1
TOP C12 S1 1
TOP C15 S1 1
TOP C18 S1 1
TOP C21 S1 1
TOP C10 F1 1
TOP C11 F1 1
TOP C12 F1 1
TOP C15 F1 1
TOP C18 F1 1
TOP C21 F1 1
TOP C8 F2 1
TOP C1 F2 1
TOP N2 F2 1
TOP C3 F2 1
TOP N5 F2 1
TOP C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TOP
_pdbe_chem_comp_rdkit_properties.exactmw 290.138
_pdbe_chem_comp_rdkit_properties.amw 290.323
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 147.930
_pdbe_chem_comp_rdkit_properties.tpsa 105.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.000
_pdbe_chem_comp_rdkit_properties.CrippenMR 75.751
_pdbe_chem_comp_rdkit_properties.chi0v 10.014
_pdbe_chem_comp_rdkit_properties.chi1v 5.066
_pdbe_chem_comp_rdkit_properties.chi2v 2.143
_pdbe_chem_comp_rdkit_properties.chi3v 2.143
_pdbe_chem_comp_rdkit_properties.chi4v 1.314
_pdbe_chem_comp_rdkit_properties.chi0n 28.014
_pdbe_chem_comp_rdkit_properties.chi1n 13.855
_pdbe_chem_comp_rdkit_properties.chi2n 2.143
_pdbe_chem_comp_rdkit_properties.chi3n 2.143
_pdbe_chem_comp_rdkit_properties.chi4n 1.314
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.700
_pdbe_chem_comp_rdkit_properties.kappa1 3.937
_pdbe_chem_comp_rdkit_properties.kappa2 6.167
_pdbe_chem_comp_rdkit_properties.kappa3 3.073
_pdbe_chem_comp_rdkit_properties.Phi 1.156
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TOP UniChem DrugBank DB00440
TOP UniChem 'Guide to Pharmacology' 10931
TOP UniChem 'KEGG LIGAND' C01965
TOP UniChem ChEBI 45924
TOP UniChem NIH SAM002264649
TOP UniChem ZINC ZINC000006627681
TOP UniChem fdasrs AN164J8Y0X
TOP UniChem PharmGKB PA451788
TOP UniChem HMDB HMDB0014583
TOP UniChem Selleck trimethoprim
TOP UniChem LINCS LSM-5246
TOP UniChem BindingDb 18069
TOP UniChem DrugCentral 2755
TOP UniChem BRENDA 155221
TOP UniChem BRENDA 252944
TOP UniChem BRENDA 503
TOP UniChem BRENDA 55818
TOP UniChem BRENDA 95248
TOP UniChem ChemicalBook CB2745185
TOP UniChem DailyMed TRIMETHOPRIM
TOP UniChem ClinicalTrials PROLOPRIM
TOP UniChem ClinicalTrials TRIMETHOPRIM
TOP UniChem ClinicalTrials 'TRIMETHOPRIM HYDROCHLORIDE'
TOP UniChem ClinicalTrials 'TRIMETHOPRIM SULFATE'
TOP UniChem ClinicalTrials TRIMPEX
TOP UniChem rxnorm TRIMETHOPRIM
TOP UniChem rxnorm 'TRIMETHOPRIM HYDROCHLORIDE'
TOP UniChem rxnorm 'TRIMETHOPRIM SULFATE'
TOP UniChem MedChemExpress HY-B0510
TOP UniChem 'Probes And Drugs' PD002101
TOP UniChem CCDC AMXBPM
TOP UniChem rxnorm PRIMSOL
TOP UniChem eMolecules 27524526
TOP UniChem eMolecules 511466
TOP UniChem SureChEMBL SCHEMBL24506
TOP UniChem 'PubChem TPHARMA' 14824824
TOP UniChem PubChem 5578
TOP UniChem Mcule MCULE-6670904388
TOP UniChem ACTor 738-70-5
TOP UniChem ACTor 8064-90-2
TOP UniChem Nikkaji J9.454D
TOP UniChem 'EPA CompTox Dashboard' DTXSID3023712
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TOP C1 2.260 -0.361 -0.207 ETKDGv3 1
TOP N2 3.416 -0.698 -0.695 ETKDGv3 2
TOP C3 4.625 -0.104 -0.210 ETKDGv3 3
TOP N4 5.881 -0.485 -0.767 ETKDGv3 4
TOP N5 4.576 0.781 0.741 ETKDGv3 5
TOP C6 3.329 1.191 1.328 ETKDGv3 6
TOP N7 3.366 2.155 2.388 ETKDGv3 7
TOP C8 2.166 0.661 0.875 ETKDGv3 8
TOP C9 0.828 1.074 1.468 ETKDGv3 9
TOP C10 -0.370 0.482 0.768 ETKDGv3 10
TOP C11 -0.889 1.073 -0.318 ETKDGv3 11
TOP C12 -2.045 0.472 -1.037 ETKDGv3 12
TOP O13 -2.586 1.107 -2.165 ETKDGv3 13
TOP C14 -2.107 2.330 -2.712 ETKDGv3 14
TOP C15 -2.568 -0.700 -0.589 ETKDGv3 15
TOP O16 -3.660 -1.359 -1.189 ETKDGv3 16
TOP C17 -4.395 -0.935 -2.332 ETKDGv3 17
TOP C18 -1.980 -1.361 0.603 ETKDGv3 18
TOP O19 -2.545 -2.577 1.023 ETKDGv3 19
TOP C20 -2.100 -3.341 2.140 ETKDGv3 20
TOP C21 -0.938 -0.797 1.241 ETKDGv3 21
TOP H1 1.377 -0.841 -0.603 ETKDGv3 22
TOP HN41 6.768 -0.059 -0.419 ETKDGv3 23
TOP HN42 5.923 -1.197 -1.529 ETKDGv3 24
TOP HN71 4.285 2.550 2.688 ETKDGv3 25
TOP HN72 2.516 2.468 2.905 ETKDGv3 26
TOP H91 0.742 2.182 1.439 ETKDGv3 27
TOP H92 0.805 0.774 2.538 ETKDGv3 28
TOP H11 -0.450 1.996 -0.674 ETKDGv3 29
TOP H141 -2.194 3.144 -1.962 ETKDGv3 30
TOP H142 -1.051 2.216 -3.036 ETKDGv3 31
TOP H143 -2.722 2.595 -3.597 ETKDGv3 32
TOP H171 -3.730 -0.883 -3.220 ETKDGv3 33
TOP H172 -4.879 0.045 -2.137 ETKDGv3 34
TOP H173 -5.191 -1.678 -2.541 ETKDGv3 35
TOP H201 -2.196 -2.747 3.073 ETKDGv3 36
TOP H202 -2.730 -4.249 2.232 ETKDGv3 37
TOP H203 -1.045 -3.655 1.991 ETKDGv3 38
TOP H21 -0.494 -1.269 2.107 ETKDGv3 39
#