Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TOP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.424 -0.48 2.568
2 N2 N N2 N Y N 0 -1.498 0.402 3.552
3 C3 C C3 N Y N 0 -0.401 0.909 4.097
4 N4 N N4 N N N 0 -0.52 1.829 5.123
5 N5 N N5 N Y N 0 0.806 0.557 3.683
6 C6 C C6 N Y N 0 0.954 -0.328 2.702
7 N7 N N7 N N N 0 2.218 -0.694 2.271
8 C8 C C8 N Y N 0 -0.183 -0.875 2.105
9 C9 C C9 N N N 0 -0.061 -1.877 0.987
10 C10 C C10 N Y N 0 -0.038 -1.155 -0.334
11 C11 C C11 N Y N 0 1.166 -0.748 -0.877
12 C12 C C12 N Y N 0 1.192 -0.083 -2.093
13 O13 O O13 N N N 0 2.377 0.316 -2.626
14 C14 C C14 N N N 0 3.398 -0.088 -1.711
15 C15 C C15 N Y N 0 0.003 0.179 -2.764
16 O16 O O16 N N N 0 0.024 0.833 -3.958
17 C17 C C17 N N N 0 -0.085 2.227 -3.667
18 C18 C C18 N Y N 0 -1.204 -0.235 -2.218
19 O19 O O19 N N N 0 -2.37 0.014 -2.873
20 C20 C C20 N N N 0 -3.42 -0.521 -2.067
21 C21 C C21 N Y N 0 -1.221 -0.9 -1.001
22 H1 H H1 N N N 0 -2.324 -0.887 2.131
23 HN41 H 1HN4 N N N 0 -1.399 2.095 5.436
24 HN42 H 2HN4 N N N 0 0.274 2.208 5.53
25 HN71 H 1HN7 N N N 0 3.004 -0.304 2.685
26 HN72 H 2HN7 N N N 0 2.318 -1.341 1.554
27 H91 H 1H9 N N N 0 -0.912 -2.558 1.015
28 H92 H 2H9 N N N 0 0.861 -2.445 1.107
29 H11 H H11 N N N 0 2.089 -0.949 -0.353
30 H141 H 1H14 N N N 0 4.372 0.212 -2.098
31 H142 H 2H14 N N N 0 3.229 0.386 -0.745
32 H143 H 3H14 N N N 0 3.372 -1.171 -1.594
33 H171 H 1H17 N N N 0 -0.073 2.795 -4.598
34 H172 H 2H17 N N N 0 -1.02 2.416 -3.139
35 H173 H 3H17 N N N 0 0.752 2.536 -3.043
36 H201 H 1H20 N N N 0 -4.379 -0.343 -2.554
37 H202 H 2H20 N N N 0 -3.271 -1.593 -1.94
38 H203 H 3H20 N N N 0 -3.413 -0.035 -1.091
39 H21 H H21 N N N 0 -2.161 -1.22 -0.575