Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TG8    

Bonds between two atoms of the molecule

Total Number of Bonds: 62


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C6 N C sing 1.38 N N
2 N7 C8 N C doub 1.3 N Y
3 N7 C5 N C sing 1.35 N Y
4 C6 C5 C C doub 1.41 N Y
5 C6 N1 C N sing 1.33 N Y
6 O2A PA O P doub 1.48 N N
7 C8 N9 C N sing 1.36 N Y
8 C5 C4 C C sing 1.41 N Y
9 O2B PB O P doub 1.48 N N
10 O3B PB O P sing 1.61 N N
11 N1 C2 N C doub 1.32 N Y
12 PB O1A P O sing 1.61 N N
13 PB O1B P O sing 1.61 N N
14 O1A PA O P sing 1.61 N N
15 PA O3A P O sing 1.61 N N
16 PA O5' P O sing 1.61 N N
17 N9 C4 N C sing 1.37 N Y
18 N9 C1' N C sing 1.46 N N
19 O2' C2' O C sing 1.43 N N
20 C4 N3 C N doub 1.33 N Y
21 C2' C1' C C sing 1.55 N N
22 C2' C3' C C sing 1.55 N N
23 O5' C5' O C sing 1.43 N N
24 C2 N3 C N sing 1.32 N Y
25 C1' O4' C O sing 1.44 N N
26 CA2 CA3 C C doub 1.38 N Y
27 CA2 CA1 C C sing 1.4 N Y
28 CA3 CA4 C C sing 1.39 N Y
29 O4' C4' O C sing 1.44 N N
30 C3' C4' C C sing 1.54 N N
31 C3' O3' C O sing 1.45 N N
32 C5' C4' C C sing 1.53 N N
33 OA CA O C doub 1.22 N N
34 CA CA1 C C sing 1.47 N N
35 CA O3' C O sing 1.35 N N
36 CA1 CA6 C C doub 1.4 N Y
37 CA4 CA5 C C doub 1.38 N Y
38 CA6 CA5 C C sing 1.39 N Y
39 CA6 NA1 C N sing 1.39 N N
40 NA1 CA7 N C sing 1.46 N N
41 CA7 H1 C H sing 1.09 N N
42 CA7 H2 C H sing 1.09 N N
43 CA7 H3 C H sing 1.09 N N
44 NA1 H4 N H sing 0.97 N N
45 CA5 H5 C H sing 1.08 N N
46 CA4 H6 C H sing 1.08 N N
47 CA3 H7 C H sing 1.08 N N
48 CA2 H8 C H sing 1.08 N N
49 C3' H9 C H sing 1.09 N N
50 C2' H10 C H sing 1.09 N N
51 O2' H11 O H sing 0.97 N N
52 C4' H12 C H sing 1.09 N N
53 C5' H13 C H sing 1.09 N N
54 C5' H14 C H sing 1.09 N N
55 O3A H15 O H sing 0.97 N N
56 O3B H16 O H sing 0.97 N N
57 O1B H17 O H sing 0.97 N N
58 C1' H18 C H sing 1.09 N N
59 C8 H19 C H sing 1.08 N N
60 C2 H20 C H sing 1.08 N N
61 N6 H21 N H sing 0.97 N N
62 N6 H22 N H sing 0.97 N N