data_TG8
#
_chem_comp.id TG8
_chem_comp.name
"[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H22 N6 O11 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-22
_chem_comp.pdbx_modified_date 2021-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 560.348
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TG8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7BDL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TG8 CA7 C1 C 0 1 N N N N N N 4.219 -30.251 10.832 5.470 -5.070 2.269 CA7 TG8 1
TG8 NA1 N1 N 0 1 N N N N N N 3.410 -30.328 9.628 4.680 -4.040 1.590 NA1 TG8 2
TG8 CA6 C2 C 0 1 Y N N N N N 3.996 -30.829 8.400 4.727 -3.928 0.207 CA6 TG8 3
TG8 CA5 C3 C 0 1 Y N N N N N 5.233 -31.722 8.458 5.609 -4.710 -0.528 CA5 TG8 4
TG8 CA4 C4 C 0 1 Y N N N N N 5.769 -32.180 7.347 5.654 -4.597 -1.902 CA4 TG8 5
TG8 CA3 C5 C 0 1 Y N N N N N 5.153 -31.816 5.999 4.822 -3.705 -2.561 CA3 TG8 6
TG8 CA2 C6 C 0 1 Y N N N N N 4.088 -31.045 5.952 3.941 -2.921 -1.850 CA2 TG8 7
TG8 CA1 C7 C 0 1 Y N N N N N 3.461 -30.512 7.240 3.878 -3.028 -0.458 CA1 TG8 8
TG8 CA C8 C 0 1 N N N N N N 2.219 -29.615 7.185 2.938 -2.193 0.308 CA TG8 9
TG8 OA O1 O 0 1 N N N N N N 2.334 -28.460 6.947 2.960 -2.211 1.523 OA TG8 10
TG8 "O3'" O2 O 0 1 N N N N N N 0.947 -30.169 7.409 2.052 -1.408 -0.338 "O3'" TG8 11
TG8 "C3'" C9 C 0 1 N N S N N N -0.102 -29.869 6.435 1.156 -0.613 0.481 "C3'" TG8 12
TG8 "C2'" C10 C 0 1 N N R N N N 0.082 -30.637 5.220 1.724 0.814 0.676 "C2'" TG8 13
TG8 "O2'" O3 O 0 1 N N N N N N 1.424 -30.581 4.657 3.131 0.842 0.429 "O2'" TG8 14
TG8 "C4'" C11 C 0 1 N N R N N N -1.381 -30.412 6.970 -0.184 -0.390 -0.246 "C4'" TG8 15
TG8 "C5'" C12 C 0 1 N N N N N N -2.519 -29.512 6.639 -1.329 -0.979 0.581 "C5'" TG8 16
TG8 "O5'" O4 O 0 1 N N N N N N -2.922 -29.680 5.307 -2.551 -0.872 -0.153 "O5'" TG8 17
TG8 PA P1 P 0 1 N N N N N N -3.873 -28.531 4.600 -3.964 -1.393 0.416 PA TG8 18
TG8 O3A O5 O 0 1 N N N N N N -3.790 -27.252 5.302 -3.917 -2.994 0.583 O3A TG8 19
TG8 O2A O6 O 0 1 N N N N N N -3.347 -28.166 3.289 -4.228 -0.767 1.730 O2A TG8 20
TG8 O1A O7 O 0 1 N N N N N N -5.433 -29.057 4.479 -5.136 -0.995 -0.613 O1A TG8 21
TG8 PB P2 P 0 1 N N N N N N -6.755 -28.071 4.399 -6.734 -0.844 -0.484 PB TG8 22
TG8 O3B O8 O 0 1 N N N N N N -7.956 -28.723 3.882 -7.401 -0.933 -1.947 O3B TG8 23
TG8 O2B O9 O 0 1 N N N N N N -6.585 -26.896 3.548 -7.265 -1.932 0.367 O2B TG8 24
TG8 O1B O10 O 0 1 N N N N N N -7.175 -27.532 5.690 -7.086 0.579 0.181 O1B TG8 25
TG8 "O4'" O11 O 0 1 N N N N N N -1.575 -31.791 6.372 -0.361 1.029 -0.390 "O4'" TG8 26
TG8 "C1'" C13 C 0 1 N N R N N N -0.244 -31.997 5.689 0.956 1.620 -0.403 "C1'" TG8 27
TG8 N9 N2 N 0 1 Y N N N N N -0.262 -32.907 4.611 0.890 3.037 -0.040 N9 TG8 28
TG8 C8 C14 C 0 1 Y N N N N N -0.827 -32.638 3.428 -0.132 3.654 0.619 C8 TG8 29
TG8 N7 N3 N 0 1 Y N N N N N -0.626 -33.750 2.641 0.142 4.916 0.781 N7 TG8 30
TG8 C5 C15 C 0 1 Y N N N N N 0.119 -34.697 3.471 1.353 5.188 0.240 C5 TG8 31
TG8 C4 C16 C 0 1 Y N N N N N 0.313 -34.097 4.681 1.848 3.986 -0.294 C4 TG8 32
TG8 N3 N4 N 0 1 Y N N N N N 0.959 -34.705 5.651 3.038 3.983 -0.886 N3 TG8 33
TG8 C2 C17 C 0 1 Y N N N N N 1.436 -35.956 5.422 3.744 5.090 -0.977 C2 TG8 34
TG8 N1 N5 N 0 1 Y N N N N N 1.247 -36.562 4.214 3.319 6.244 -0.496 N1 TG8 35
TG8 C6 C18 C 0 1 Y N N N N N 0.592 -35.938 3.240 2.145 6.343 0.118 C6 TG8 36
TG8 N6 N6 N 0 1 N N N N N N 0.389 -36.579 1.955 1.709 7.556 0.623 N6 TG8 37
TG8 H1 H1 H 0 1 N N N N N N 3.612 -29.850 11.657 5.165 -6.054 1.914 H1 TG8 38
TG8 H2 H2 H 0 1 N N N N N N 4.579 -31.256 11.096 6.528 -4.918 2.052 H2 TG8 39
TG8 H3 H3 H 0 1 N N N N N N 5.079 -29.588 10.654 5.306 -5.003 3.344 H3 TG8 40
TG8 H4 H4 H 0 1 N N N N N N 3.085 -29.402 9.437 4.124 -3.436 2.107 H4 TG8 41
TG8 H5 H5 H 0 1 N N N N N N 5.669 -31.978 9.412 6.261 -5.407 -0.023 H5 TG8 42
TG8 H6 H6 H 0 1 N N N N N N 6.643 -32.812 7.389 6.343 -5.207 -2.468 H6 TG8 43
TG8 H7 H7 H 0 1 N N N N N N 5.590 -32.191 5.085 4.866 -3.625 -3.637 H7 TG8 44
TG8 H8 H8 H 0 1 N N N N N N 3.654 -30.787 4.997 3.295 -2.228 -2.369 H8 TG8 45
TG8 H9 H9 H 0 1 N N N N N N -0.177 -28.790 6.234 0.992 -1.095 1.445 H9 TG8 46
TG8 H10 H10 H 0 1 N N N N N N -0.653 -30.323 4.464 1.498 1.189 1.675 H10 TG8 47
TG8 H11 H11 H 0 1 N N N N N N 1.608 -29.696 4.363 3.517 1.728 0.451 H11 TG8 48
TG8 H12 H12 H 0 1 N N N N N N -1.303 -30.508 8.063 -0.156 -0.861 -1.228 H12 TG8 49
TG8 H13 H13 H 0 1 N N N N N N -2.208 -28.468 6.792 -1.122 -2.028 0.791 H13 TG8 50
TG8 H14 H14 H 0 1 N N N N N N -3.365 -29.743 7.303 -1.419 -0.431 1.518 H14 TG8 51
TG8 H15 H15 H 0 1 N N N N N N -3.433 -26.593 4.719 -3.748 -3.471 -0.241 H15 TG8 52
TG8 H16 H16 H 0 1 N N N N N N -8.298 -28.223 3.150 -8.365 -0.849 -1.945 H16 TG8 53
TG8 H17 H17 H 0 1 N N N N N N -7.225 -26.585 5.637 -6.768 1.339 -0.324 H17 TG8 54
TG8 H18 H18 H 0 1 N N N N N N 0.496 -32.311 6.440 1.423 1.494 -1.380 H18 TG8 55
TG8 H19 H19 H 0 1 N N N N N N -1.339 -31.730 3.147 -1.035 3.168 0.955 H19 TG8 56
TG8 H20 H20 H 0 1 N N N N N N 1.970 -36.476 6.203 4.707 5.054 -1.464 H20 TG8 57
TG8 H21 H21 H 0 1 N N N N N N 0.804 -37.489 1.966 0.849 7.616 1.068 H21 TG8 58
TG8 H22 H22 H 0 1 N N N N N N -0.591 -36.662 1.775 2.265 8.346 0.534 H22 TG8 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TG8 N6 C6 SING N N 1
TG8 N7 C8 DOUB Y N 2
TG8 N7 C5 SING Y N 3
TG8 C6 C5 DOUB Y N 4
TG8 C6 N1 SING Y N 5
TG8 O2A PA DOUB N N 6
TG8 C8 N9 SING Y N 7
TG8 C5 C4 SING Y N 8
TG8 O2B PB DOUB N N 9
TG8 O3B PB SING N N 10
TG8 N1 C2 DOUB Y N 11
TG8 PB O1A SING N N 12
TG8 PB O1B SING N N 13
TG8 O1A PA SING N N 14
TG8 PA O3A SING N N 15
TG8 PA "O5'" SING N N 16
TG8 N9 C4 SING Y N 17
TG8 N9 "C1'" SING N N 18
TG8 "O2'" "C2'" SING N N 19
TG8 C4 N3 DOUB Y N 20
TG8 "C2'" "C1'" SING N N 21
TG8 "C2'" "C3'" SING N N 22
TG8 "O5'" "C5'" SING N N 23
TG8 C2 N3 SING Y N 24
TG8 "C1'" "O4'" SING N N 25
TG8 CA2 CA3 DOUB Y N 26
TG8 CA2 CA1 SING Y N 27
TG8 CA3 CA4 SING Y N 28
TG8 "O4'" "C4'" SING N N 29
TG8 "C3'" "C4'" SING N N 30
TG8 "C3'" "O3'" SING N N 31
TG8 "C5'" "C4'" SING N N 32
TG8 OA CA DOUB N N 33
TG8 CA CA1 SING N N 34
TG8 CA "O3'" SING N N 35
TG8 CA1 CA6 DOUB Y N 36
TG8 CA4 CA5 DOUB Y N 37
TG8 CA6 CA5 SING Y N 38
TG8 CA6 NA1 SING N N 39
TG8 NA1 CA7 SING N N 40
TG8 CA7 H1 SING N N 41
TG8 CA7 H2 SING N N 42
TG8 CA7 H3 SING N N 43
TG8 NA1 H4 SING N N 44
TG8 CA5 H5 SING N N 45
TG8 CA4 H6 SING N N 46
TG8 CA3 H7 SING N N 47
TG8 CA2 H8 SING N N 48
TG8 "C3'" H9 SING N N 49
TG8 "C2'" H10 SING N N 50
TG8 "O2'" H11 SING N N 51
TG8 "C4'" H12 SING N N 52
TG8 "C5'" H13 SING N N 53
TG8 "C5'" H14 SING N N 54
TG8 O3A H15 SING N N 55
TG8 O3B H16 SING N N 56
TG8 O1B H17 SING N N 57
TG8 "C1'" H18 SING N N 58
TG8 C8 H19 SING N N 59
TG8 C2 H20 SING N N 60
TG8 N6 H21 SING N N 61
TG8 N6 H22 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TG8 InChI InChI 1.03 InChI=1S/C18H22N6O11P2/c1-20-10-5-3-2-4-9(10)18(26)34-14-11(6-32-37(30,31)35-36(27,28)29)33-17(13(14)25)24-8-23-12-15(19)21-7-22-16(12)24/h2-5,7-8,11,13-14,17,20,25H,6H2,1H3,(H,30,31)(H2,19,21,22)(H2,27,28,29)/t11-,13-,14-,17-/m1/s1
TG8 InChIKey InChI 1.03 ANMCUTJZONROBG-LSCFUAHRSA-N
TG8 SMILES_CANONICAL CACTVS 3.385 CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34
TG8 SMILES CACTVS 3.385 CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34
TG8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O
TG8 SMILES "OpenEye OEToolkits" 2.0.7 CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O
#
_pdbx_chem_comp_identifier.comp_id TG8
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TG8 'Create component' 2020-12-22 PDBE
TG8 'Initial release' 2021-06-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TG8 CA7 C 11.049 6.731 1
TG8 NA1 N 10.043 5.617 2
TG8 CA6 C 8.577 5.932 3
TG8 CA5 C 8.116 7.359 4
TG8 CA4 C 6.649 7.674 5
TG8 CA3 C 5.643 6.561 6
TG8 CA2 C 6.104 5.133 7
TG8 CA1 C 7.571 4.819 8
TG8 CA C 8.032 3.392 9
TG8 OA O 9.499 3.077 10
TG8 "O3'" O 7.027 2.279 11
TG8 "C3'" C 7.487 0.851 12
TG8 "C2'" C 6.604 -0.361 13
TG8 "O2'" O 5.104 -0.358 14
TG8 "C4'" C 8.913 0.385 15
TG8 "C5'" C 10.129 1.265 16
TG8 "O5'" O 11.498 0.652 17
TG8 PA P 12.713 1.532 18
TG8 O3A O 11.833 2.747 19
TG8 O2A O 13.592 0.317 20
TG8 O1A O 13.928 2.411 21
TG8 PB P 15.297 1.799 22
TG8 O3B O 15.909 3.168 23
TG8 O2B O 16.666 1.187 24
TG8 O1B O 14.684 0.430 25
TG8 "O4'" O 8.911 -1.115 26
TG8 "C1'" C 7.483 -1.576 27
TG8 N9 N 7.018 -3.002 28
TG8 C8 C 7.893 -4.209 29
TG8 N7 N 7.018 -5.416 30
TG8 C5 C 5.598 -4.959 31
TG8 C4 C 5.598 -3.459 32
TG8 N3 N 4.299 -2.709 33
TG8 C2 C 3.000 -3.459 34
TG8 N1 N 3.000 -4.959 35
TG8 C6 C 4.299 -5.709 36
TG8 N6 N 4.299 -7.209 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TG8 N6 C6 SINGLE NONE 1
TG8 N7 C8 DOUBLE NONE 2
TG8 N7 C5 SINGLE NONE 3
TG8 C6 C5 SINGLE NONE 4
TG8 C6 N1 DOUBLE NONE 5
TG8 O2A PA DOUBLE NONE 6
TG8 C8 N9 SINGLE NONE 7
TG8 C5 C4 DOUBLE NONE 8
TG8 O2B PB DOUBLE NONE 9
TG8 O3B PB SINGLE NONE 10
TG8 N1 C2 SINGLE NONE 11
TG8 PB O1A SINGLE NONE 12
TG8 PB O1B SINGLE NONE 13
TG8 O1A PA SINGLE NONE 14
TG8 PA O3A SINGLE BEGINWEDGE 15
TG8 PA "O5'" SINGLE NONE 16
TG8 N9 C4 SINGLE NONE 17
TG8 "C1'" N9 SINGLE BEGINWEDGE 18
TG8 "C2'" "O2'" SINGLE BEGINDASH 19
TG8 C4 N3 SINGLE NONE 20
TG8 "C2'" "C1'" SINGLE NONE 21
TG8 "C2'" "C3'" SINGLE NONE 22
TG8 "O5'" "C5'" SINGLE NONE 23
TG8 C2 N3 DOUBLE NONE 24
TG8 "C1'" "O4'" SINGLE NONE 25
TG8 CA2 CA3 DOUBLE NONE 26
TG8 CA2 CA1 SINGLE NONE 27
TG8 CA3 CA4 SINGLE NONE 28
TG8 "O4'" "C4'" SINGLE NONE 29
TG8 "C3'" "C4'" SINGLE NONE 30
TG8 "C3'" "O3'" SINGLE BEGINDASH 31
TG8 "C4'" "C5'" SINGLE BEGINWEDGE 32
TG8 OA CA DOUBLE NONE 33
TG8 CA CA1 SINGLE NONE 34
TG8 CA "O3'" SINGLE NONE 35
TG8 CA1 CA6 DOUBLE NONE 36
TG8 CA4 CA5 DOUBLE NONE 37
TG8 CA6 CA5 SINGLE NONE 38
TG8 CA6 NA1 SINGLE NONE 39
TG8 NA1 CA7 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TG8 MurckoScaffold S1 scaffold 'O=C(O[C@@H]1CO[C@@H](n2cnc3cncnc32)C1)c1ccccc1' InChI=1S/C16H14N4O3/c21-16(11-4-2-1-3-5-11)23-12-6-14(22-8-12)20-10-19-13-7-17-9-18-15(13)20/h1-5,7,9-10,12,14H,6,8H2/t12-,14+/m0/s1 DBTLDMDEXJWFQK-GXTWGEPZSA-N
TG8 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
TG8 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
TG8 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TG8 phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
TG8 purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
TG8 pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
TG8 ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TG8 CA6 S1 1
TG8 CA5 S1 1
TG8 CA4 S1 1
TG8 CA3 S1 1
TG8 CA2 S1 1
TG8 CA1 S1 1
TG8 CA S1 1
TG8 OA S1 1
TG8 "O3'" S1 1
TG8 "C3'" S1 1
TG8 "C2'" S1 1
TG8 "C4'" S1 1
TG8 "O4'" S1 1
TG8 "C1'" S1 1
TG8 N9 S1 1
TG8 C8 S1 1
TG8 N7 S1 1
TG8 C5 S1 1
TG8 C4 S1 1
TG8 N3 S1 1
TG8 C2 S1 1
TG8 N1 S1 1
TG8 C6 S1 1
TG8 N1 F1 1
TG8 C6 F1 1
TG8 C5 F1 1
TG8 C4 F1 1
TG8 N3 F1 1
TG8 C2 F1 1
TG8 N9 F1 1
TG8 C8 F1 1
TG8 N7 F1 1
TG8 N6 F1 1
TG8 C5 F2 1
TG8 C4 F2 1
TG8 N9 F2 1
TG8 C8 F2 1
TG8 N7 F2 1
TG8 CA6 F3 1
TG8 CA1 F3 1
TG8 CA2 F3 1
TG8 CA3 F3 1
TG8 CA4 F3 1
TG8 CA5 F3 1
TG8 "O5'" F4 1
TG8 PA F4 1
TG8 O2A F4 1
TG8 O1A F4 1
TG8 O3A F4 1
TG8 O1A F4 2
TG8 PB F4 2
TG8 O2B F4 2
TG8 O3B F4 2
TG8 O1B F4 2
TG8 N7 F5 1
TG8 C8 F5 1
TG8 N9 F5 1
TG8 C4 F5 1
TG8 C5 F5 1
TG8 C6 F5 1
TG8 N1 F5 1
TG8 C2 F5 1
TG8 N3 F5 1
TG8 C5 F6 1
TG8 C6 F6 1
TG8 N1 F6 1
TG8 C2 F6 1
TG8 N3 F6 1
TG8 C4 F6 1
TG8 "C2'" F7 1
TG8 "C3'" F7 1
TG8 "C4'" F7 1
TG8 "O4'" F7 1
TG8 "C1'" F7 1
TG8 "C5'" F7 1
TG8 "O5'" F7 1
TG8 "O3'" F7 1
TG8 "O2'" F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TG8
_pdbe_chem_comp_rdkit_properties.exactmw 560.082
_pdbe_chem_comp_rdkit_properties.amw 560.353
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.009
_pdbe_chem_comp_rdkit_properties.tpsa 250.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.084
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.631
_pdbe_chem_comp_rdkit_properties.chi0v 18.857
_pdbe_chem_comp_rdkit_properties.chi1v 11.744
_pdbe_chem_comp_rdkit_properties.chi2v 5.761
_pdbe_chem_comp_rdkit_properties.chi3v 5.761
_pdbe_chem_comp_rdkit_properties.chi4v 3.793
_pdbe_chem_comp_rdkit_properties.chi0n 39.068
_pdbe_chem_comp_rdkit_properties.chi1n 19.297
_pdbe_chem_comp_rdkit_properties.chi2n 3.846
_pdbe_chem_comp_rdkit_properties.chi3n 3.846
_pdbe_chem_comp_rdkit_properties.chi4n 2.485
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.980
_pdbe_chem_comp_rdkit_properties.kappa1 10.649
_pdbe_chem_comp_rdkit_properties.kappa2 10.413
_pdbe_chem_comp_rdkit_properties.kappa3 5.959
_pdbe_chem_comp_rdkit_properties.Phi 2.997
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TG8 UniChem ChEBI 71336
TG8 UniChem PubChem 2826726
TG8 UniChem MetaboLights MTBLC71336
TG8 UniChem BRENDA 147360
TG8 UniChem BRENDA 149270
TG8 UniChem BRENDA 197455
TG8 UniChem 'EPA CompTox Dashboard' DTXSID10234490
TG8 UniChem ACTor 85287-55-4
TG8 UniChem Nikkaji J677.598E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TG8 CA7 6.344 -1.003 1.120 ETKDGv3 1
TG8 NA1 5.079 -0.891 0.403 ETKDGv3 2
TG8 CA6 5.005 -0.632 -1.014 ETKDGv3 3
TG8 CA5 6.155 -0.994 -1.891 ETKDGv3 4
TG8 CA4 6.073 -0.855 -3.218 ETKDGv3 5
TG8 CA3 4.841 -0.337 -3.832 ETKDGv3 6
TG8 CA2 3.804 0.007 -3.063 ETKDGv3 7
TG8 CA1 3.879 -0.122 -1.584 ETKDGv3 8
TG8 CA 2.720 0.359 -0.801 ETKDGv3 9
TG8 OA 2.888 0.908 0.323 ETKDGv3 10
TG8 "O3'" 1.437 0.259 -1.349 ETKDGv3 11
TG8 "C3'" 0.267 0.758 -0.699 ETKDGv3 12
TG8 "C2'" 0.169 2.270 -0.742 ETKDGv3 13
TG8 "O2'" 0.978 2.831 -1.751 ETKDGv3 14
TG8 "C4'" -0.990 0.319 -1.438 ETKDGv3 15
TG8 "C5'" -1.507 -1.040 -0.955 ETKDGv3 16
TG8 "O5'" -1.942 -0.934 0.381 ETKDGv3 17
TG8 PA -2.549 -2.446 0.882 ETKDGv3 18
TG8 O3A -1.301 -3.592 0.857 ETKDGv3 19
TG8 O2A -3.051 -2.295 2.301 ETKDGv3 20
TG8 O1A -3.820 -2.913 -0.155 ETKDGv3 21
TG8 PB -4.542 -4.310 0.498 ETKDGv3 22
TG8 O3B -3.395 -5.533 0.735 ETKDGv3 23
TG8 O2B -5.592 -4.806 -0.471 ETKDGv3 24
TG8 O1B -5.294 -3.944 1.970 ETKDGv3 25
TG8 "O4'" -1.981 1.304 -1.254 ETKDGv3 26
TG8 "C1'" -1.322 2.529 -1.017 ETKDGv3 27
TG8 N9 -1.958 3.213 0.110 ETKDGv3 28
TG8 C8 -3.063 4.123 0.002 ETKDGv3 29
TG8 N7 -3.805 4.187 1.069 ETKDGv3 30
TG8 C5 -3.200 3.266 1.967 ETKDGv3 31
TG8 C4 -2.160 2.699 1.417 ETKDGv3 32
TG8 N3 -1.494 1.587 2.027 ETKDGv3 33
TG8 C2 -1.931 1.148 3.178 ETKDGv3 34
TG8 N1 -3.081 1.763 3.810 ETKDGv3 35
TG8 C6 -3.704 2.767 3.253 ETKDGv3 36
TG8 N6 -4.847 3.348 3.879 ETKDGv3 37
TG8 H1 6.973 -0.110 0.920 ETKDGv3 38
TG8 H2 6.153 -1.067 2.212 ETKDGv3 39
TG8 H3 6.880 -1.923 0.806 ETKDGv3 40
TG8 H4 4.205 -1.028 0.958 ETKDGv3 41
TG8 H5 7.069 -1.387 -1.468 ETKDGv3 42
TG8 H6 6.913 -1.126 -3.845 ETKDGv3 43
TG8 H7 4.779 -0.232 -4.907 ETKDGv3 44
TG8 H8 2.909 0.399 -3.530 ETKDGv3 45
TG8 H9 0.245 0.409 0.358 ETKDGv3 46
TG8 H10 0.488 2.698 0.234 ETKDGv3 47
TG8 H11 0.707 2.434 -2.621 ETKDGv3 48
TG8 H12 -0.772 0.244 -2.528 ETKDGv3 49
TG8 H13 -0.682 -1.782 -1.049 ETKDGv3 50
TG8 H14 -2.349 -1.339 -1.620 ETKDGv3 51
TG8 H15 -1.255 -3.903 -0.082 ETKDGv3 52
TG8 H16 -3.073 -5.758 -0.174 ETKDGv3 53
TG8 H17 -5.599 -4.818 2.322 ETKDGv3 54
TG8 H18 -1.433 3.167 -1.922 ETKDGv3 55
TG8 H19 -3.284 4.688 -0.895 ETKDGv3 56
TG8 H20 -1.440 0.310 3.654 ETKDGv3 57
TG8 H21 -5.347 4.150 3.436 ETKDGv3 58
TG8 H22 -5.195 2.978 4.791 ETKDGv3 59
#